Jatropha Genome Database
- JcCB0215961.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0215961.20 + phase: 2 /partial
(314 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr8g137340.1 MCM; Nucleic acid-binding, OB-fold, subgrou... 501 e-142
IMGA|Medtr8g137330.1 MCM; Nucleic acid-binding, OB-fold, subgrou... 500 e-142
IMGA|Medtr4g165910.1 MCM; Nucleic acid-binding, OB-fold, subgrou... 152 3e-37
IMGA|Medtr7g120880.1 MCM; Nucleic acid-binding, OB-fold, subgrou... 132 2e-31
IMGA|Medtr2g009230.1 MCM; Nucleic acid-binding, OB-fold, subgrou... 114 4e-26
IMGA|Medtr4g096540.1 MCM; Nucleic acid-binding, OB-fold, subgrou... 111 4e-25
IMGA|Medtr7g132920.1 MCM; Nucleic acid-binding, OB-fold, subgrou... 108 3e-24
IMGA|Medtr7g068310.1 MCM chr07_pseudomolecule_IMGAG_V3 13980107-... 69 3e-12
>IMGA|Medtr8g137340.1 MCM; Nucleic acid-binding, OB-fold, subgroup
chr08_pseudomolecule_IMGAG_V3 32903343-32908349 E
EGN_Mt090430 20090702
Length = 883
Score = 501 bits (1289), Expect = e-142, Method: Compositional matrix adjust.
Identities = 247/313 (78%), Positives = 275/313 (87%), Gaps = 5/313 (1%)
Query: 1 VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRF 60
VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSK FTQNVELTDPIISRF
Sbjct: 576 VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKLFTQNVELTDPIISRF 635
Query: 61 DILCVVKDVVDPVADEMLAKFVVDSHFKSQPKGANIDDRSLSESQEDAQASARPFDPEIL 120
DILCVVKDVVDPV DEMLAKFVVDSHFKSQPKGAN D S+SESQ+ AS P DPEIL
Sbjct: 636 DILCVVKDVVDPVTDEMLAKFVVDSHFKSQPKGANND--SVSESQD---ASGMPIDPEIL 690
Query: 121 PQDLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRRESSHGQGVPIAVRHIESMIRMSE 180
PQDLLKKY+TYAKLNVFPRLHD+D+ KL VYAELR+ESSHGQGVPIAVRHIESMIRMSE
Sbjct: 691 PQDLLKKYVTYAKLNVFPRLHDADLNKLSHVYAELRKESSHGQGVPIAVRHIESMIRMSE 750
Query: 181 SHARMHLRQHVTEEDVDVAIRVLLNSFISTQKYGVQRALQKSFRKYITYKMDYNRMLLNL 240
+HARMHLRQHV +EDVD+AIRVLL+SFISTQK+GVQ+ALQKSFRKY+T+K DYN ML+ +
Sbjct: 751 AHARMHLRQHVIQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNDMLIYI 810
Query: 241 LQELVNRALRFEEIITGSISGLSHIDVKVEDLRIMAEERGISDLNPFFSSTDFSAANFEL 300
L+ LV AL E+I+TGS S L+H+D+KV+DL A+E I DL PFF+S+ FS ANFEL
Sbjct: 811 LRGLVTNALHLEDILTGSTSSLTHVDIKVDDLSFKAQEHEIYDLTPFFNSSIFSNANFEL 870
Query: 301 DNVRQVIKHHLPR 313
D R VI+H+L R
Sbjct: 871 DKERGVIRHYLTR 883
>IMGA|Medtr8g137330.1 MCM; Nucleic acid-binding, OB-fold, subgroup
chr08_pseudomolecule_IMGAG_V3 32897406-32892230 E
EGN_Mt090430 20090702
Length = 929
Score = 500 bits (1288), Expect = e-142, Method: Compositional matrix adjust.
Identities = 247/313 (78%), Positives = 275/313 (87%), Gaps = 5/313 (1%)
Query: 1 VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRF 60
VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSK FTQNVELTDPIISRF
Sbjct: 622 VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKLFTQNVELTDPIISRF 681
Query: 61 DILCVVKDVVDPVADEMLAKFVVDSHFKSQPKGANIDDRSLSESQEDAQASARPFDPEIL 120
DILCVVKDVVDPV DEMLAKFVVDSHFKSQPKGAN D S+SESQ+ AS P DPEIL
Sbjct: 682 DILCVVKDVVDPVTDEMLAKFVVDSHFKSQPKGANND--SVSESQD---ASGMPIDPEIL 736
Query: 121 PQDLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRRESSHGQGVPIAVRHIESMIRMSE 180
PQDLLKKY+TYAKLNVFPRLHD+D+ KL VYAELR+ESSHGQGVPIAVRHIESMIRMSE
Sbjct: 737 PQDLLKKYVTYAKLNVFPRLHDADLNKLSHVYAELRKESSHGQGVPIAVRHIESMIRMSE 796
Query: 181 SHARMHLRQHVTEEDVDVAIRVLLNSFISTQKYGVQRALQKSFRKYITYKMDYNRMLLNL 240
+HARMHLRQHV +EDVD+AIRVLL+SFISTQK+GVQ+ALQKSFRKY+T+K DYN ML+ +
Sbjct: 797 AHARMHLRQHVIQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNDMLIYI 856
Query: 241 LQELVNRALRFEEIITGSISGLSHIDVKVEDLRIMAEERGISDLNPFFSSTDFSAANFEL 300
L+ LV AL E+I+TGS S L+H+D+KV+DL A+E I DL PFF+S+ FS ANFEL
Sbjct: 857 LRGLVTNALHLEDILTGSTSSLTHVDIKVDDLSFKAQEHEIYDLTPFFNSSIFSNANFEL 916
Query: 301 DNVRQVIKHHLPR 313
D R VI+H+L R
Sbjct: 917 DKERGVIRHYLTR 929
>IMGA|Medtr4g165910.1 MCM; Nucleic acid-binding, OB-fold, subgroup
chr04_pseudomolecule_IMGAG_V3 41900221-41894142 E
EGN_Mt090430 20090702
Length = 773
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 132/225 (58%), Gaps = 22/225 (9%)
Query: 1 VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRF 60
V+IHE MEQQ+++I+KAGI SL ARCSV+AAANPI G YD S T T+N+ L D ++SRF
Sbjct: 414 VAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRF 473
Query: 61 DILCVVKDVVDPVADEMLAKFVVDSH-FKSQPKGA----NIDDRSLSESQEDAQASA--- 112
D+L +V D +DP D +++ V+ H F+S G + R E + D ++S
Sbjct: 474 DLLFIVLDQMDPDIDRQISEHVLRMHRFRSAIDGGEAAHDGSARYGREEEADTESSVFVK 533
Query: 113 -----------RPFDPEILPQDLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRRESSH 161
R + L LKKYI YAK + P L D E++ YAELR S+
Sbjct: 534 YNRMLHGKKTDRGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEASEQIAAAYAELRNAKSN 593
Query: 162 ---GQGVPIAVRHIESMIRMSESHARMHLRQHVTEEDVDVAIRVL 203
G +PI R +E++IR+S +HA++ L + V++ DVD A+++L
Sbjct: 594 AKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVDAALKIL 638
>IMGA|Medtr7g120880.1 MCM; Nucleic acid-binding, OB-fold, subgroup
chr07_pseudomolecule_IMGAG_V3 28341732-28334597 H
EGN_Mt090430 20090702
Length = 842
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 130/230 (56%), Gaps = 24/230 (10%)
Query: 2 SIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRFD 61
++ EAMEQQ +SI+KAG+V SL +R SV+AAANP+GG Y+ +KT +N++++ ++SRFD
Sbjct: 512 ALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFD 571
Query: 62 ILCVVKDVVDPVADEMLAKFVVDSHFKS-QPKGANIDDRS--LSESQEDAQASARPFDPE 118
++ ++ D D + D+ +++ ++ H S Q A+ R S+S+ A +A D
Sbjct: 572 LIFILLDKPDELLDKRVSEHIMSLHAGSGQHSQASKKRRGDPPSDSRASASQNAEGIDLG 631
Query: 119 I---------------------LPQDLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRR 157
+ LP LL+KYI YA+ VFPR+ + +++ Y +LR
Sbjct: 632 VRSGSLISRLKLDRRRDSDFVPLPGQLLRKYIAYARSYVFPRMSKPAADIIQKFYLKLRD 691
Query: 158 ESSHGQGVPIAVRHIESMIRMSESHARMHLRQHVTEEDVDVAIRVLLNSF 207
+ G PI R +ES++R++E+ AR+ LR +T +D + ++ S
Sbjct: 692 HNVSADGTPITARQLESLVRLAEARARLDLRVEITAQDAMDVVEIMKESL 741
>IMGA|Medtr2g009230.1 MCM; Nucleic acid-binding, OB-fold, subgroup
chr02_pseudomolecule_IMGAG_V3 1989579-2000046 H
EGN_Mt090430 20090702
Length = 581
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 112/209 (53%), Gaps = 21/209 (10%)
Query: 2 SIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRFD 61
+IHEAMEQQ+IS++KAG+VT+L + +V A NP G YD + + N L+ P++SRFD
Sbjct: 347 TIHEAMEQQTISVAKAGLVTTLSTKTTVFGATNP-KGNYDPDQPLSVNTTLSGPLLSRFD 405
Query: 62 ILCVVKDVVDPVADEMLAKFVVDSHFKSQPKGANIDDRSLSESQEDAQASARPFDPEILP 121
I+ V+ D +P D VV SH LSE++ D ++ P
Sbjct: 406 IVLVLLDTKNPDWDA-----VVSSHI-------------LSEAEPDRTSNDEDLANN-WP 446
Query: 122 QDLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRRESSHGQGVPIAVRHIESMIRMSES 181
LK+YI Y K N P L + E + Y +L+R+S+ VR +ES+IR++++
Sbjct: 447 LSTLKRYIHYVKENFRPVL-TREAETVISSYYQLQRKSATHNAARTTVRMLESLIRLAQA 505
Query: 182 HARMHLRQHVTEEDVDVAIRVLLNSFIST 210
HAR+ R VT D A+ + +S ++
Sbjct: 506 HARLMFRNEVTRLDAITAVLCIESSMTTS 534
>IMGA|Medtr4g096540.1 MCM; Nucleic acid-binding, OB-fold, subgroup
chr04_pseudomolecule_IMGAG_V3 20349558-20344347 E
EGN_Mt090430 20090702
Length = 840
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 109/205 (53%), Gaps = 26/205 (12%)
Query: 3 IHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRFDI 62
+HE MEQQ++SI+KAGI+ SL AR SV+A ANP G RY+ + N+ L ++SRFD+
Sbjct: 557 LHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDL 616
Query: 63 LCVVKDVVDPVADEMLAKFVVDSHFKSQPKGANIDDRSLSESQEDAQASARPFDPEILPQ 122
+ ++ D D D LAK +V H+K NI+ ++L
Sbjct: 617 IYLMLDKADEQTDRRLAKHIVSLHYKDY---ENIEQ-------------------DVLDI 654
Query: 123 DLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRR----ESSHGQGVPIAVRHIESMIRM 178
L Y++YA+ ++ P+L D ++L Y ++R S + + R IES++R+
Sbjct: 655 STLTDYVSYARKHIHPQLSDEAADELITGYVKIRGRGKFSGSSKKVITATPRQIESLLRL 714
Query: 179 SESHARMHLRQHVTEEDVDVAIRVL 203
SE+ AR+ + V + DV A R+L
Sbjct: 715 SEALARIRFSESVEKHDVVEAFRLL 739
>IMGA|Medtr7g132920.1 MCM; Nucleic acid-binding, OB-fold, subgroup
chr07_pseudomolecule_IMGAG_V3 30928106-30922243 E
EGN_Mt090430 20090702
Length = 720
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 26/206 (12%)
Query: 1 VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRF 60
SIHE MEQQ++SI+KAGI TSL AR +V+AAANP GRYD +T +N+ L ++SRF
Sbjct: 453 TSIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRF 512
Query: 61 DILCVVKDVVDPVADEMLAKFVVDSHFKSQPKGANIDDRSLSESQEDAQASARPFDPEIL 120
D+L ++ D D D +A+ VV H +++E P +P
Sbjct: 513 DLLWLILDRADMDNDLEMARHVVYVH----------------QNKESPALGFTPLEPS-- 554
Query: 121 PQDLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRRESSHGQGVP---IAVRHIESMIR 177
LL+ YI+ A+ + P + E + Y+ +R+E + P +R + S++R
Sbjct: 555 ---LLRAYISTAR-RLSPTVPRELEEYIASAYSSIRQEEAKST-TPHSYTTIRTLLSILR 609
Query: 178 MSESHARMHLRQHVTEEDVDVAIRVL 203
+S + AR+ + V + DVD A+R++
Sbjct: 610 ISAALARLRFSETVAQSDVDEALRLM 635
>IMGA|Medtr7g068310.1 MCM chr07_pseudomolecule_IMGAG_V3
13980107-13978408 H EGN_Mt090430 20090702
Length = 220
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 52/88 (59%)
Query: 120 LPQDLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRRESSHGQGVPIAVRHIESMIRMS 179
LP LL+KYI YA+ VFPR+ + +++ Y +LR + G PI R +ES++R++
Sbjct: 46 LPGQLLRKYIAYARSYVFPRMSKPAADIIQKFYLKLRDHNVSADGTPITARQLESLVRLA 105
Query: 180 ESHARMHLRQHVTEEDVDVAIRVLLNSF 207
E+ AR+ LR +T +D + ++ S
Sbjct: 106 EARARLDLRVEITAQDAMDVVEIMKESL 133