Jatropha Genome Database
- JcCB0213661.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0213661.20 - phase: 2 /pseudo/partial
(396 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr3g076080.1 Blue (type 1) copper domain; Amine oxidase;... 214 6e-56
IMGA|Medtr2g117980.1 Helicase, C-terminal; chr02_pseudomolecule_... 205 3e-53
IMGA|Medtr1g143710.1 Helicase, C-terminal; ATP-dependent helicas... 129 2e-30
IMGA|Medtr6g067330.1 Helicase, C-terminal; chr06_pseudomolecule_... 109 2e-24
IMGA|Medtr1g106350.1 Helicase, C-terminal; chr01_pseudomolecule_... 101 5e-22
IMGA|Medtr4g130310.1 Helicase, C-terminal; chr04_pseudomolecule_... 101 6e-22
IMGA|Medtr3g069120.1 Helicase, C-terminal; chr03_pseudomolecule_... 100 2e-21
IMGA|Medtr5g083120.1 Helicase, C-terminal; chr05_pseudomolecule_... 86 4e-17
IMGA|Medtr2g018740.1 Helicase, C-terminal chr02_pseudomolecule_I... 72 3e-13
IMGA|Medtr3g005610.1 Helicase, C-terminal; Zinc finger, RING-typ... 67 2e-11
IMGA|Medtr3g102250.1 von Willebrand factor, type C; Helicase, C-... 65 7e-11
IMGA|Medtr8g138550.1 Sec1-like protein; Helicase, C-terminal; ch... 55 5e-08
IMGA|Medtr4g024790.1 Helicase, C-terminal; chr04_pseudomolecule_... 55 5e-08
>IMGA|Medtr3g076080.1 Blue (type 1) copper domain; Amine oxidase;
Helicase-associated region chr03_pseudomolecule_IMGAG_V3
17526772-17523313 E EGN_Mt090430 20090702
Length = 438
Score = 214 bits (545), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 111/207 (53%), Positives = 125/207 (60%), Gaps = 2/207 (0%)
Query: 123 RMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPEIQRTNLGN 182
RMGMDALQVFPVS+ AA+Q AGRA RT CY LYTESAYLNEM+ SPVPEIQRTNLGN
Sbjct: 45 RMGMDALQVFPVSQAAANQRAGRAGRTGPGACYRLYTESAYLNEMLASPVPEIQRTNLGN 104
Query: 183 VVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLGWKMVEFHQTL 242
VV FDF+DPPPQDNILNSMYQLW+L ALNN GRLT+LGWKMVEF
Sbjct: 105 VVLLLKSLKVENLLDFDFIDPPPQDNILNSMYQLWMLGALNNAGRLTELGWKMVEFPLDP 164
Query: 243 HLLRCCXWESNWDAXMRFXRLXXXXXXXXXXXAPK--IEQRKVMLRGRXXXXXXXXXXXX 300
L + ++ + PK E+
Sbjct: 165 PLAKMLLMGEHFGCLEEVLTIVSMLSVPSVFFRPKDRAEESDAARERFFVPESDHLTLYN 224
Query: 301 VYLQWKEHQYRGDWCNDHFLHIKGLRR 327
VY QWK+H YRGDWCNDHFL +KGLR+
Sbjct: 225 VYQQWKQHYYRGDWCNDHFLQVKGLRK 251
>IMGA|Medtr2g117980.1 Helicase, C-terminal;
chr02_pseudomolecule_IMGAG_V3 27858159-27867755 E
EGN_Mt090430 20090702
Length = 1269
Score = 205 bits (522), Expect = 3e-53, Method: Composition-based stats.
Identities = 97/123 (78%), Positives = 99/123 (80%)
Query: 116 KMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPEI 175
KMKVYN RMGMDALQVFPVSR AADQ AGRA RT TCY LYTESAYLNEM+ SPVPEI
Sbjct: 871 KMKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLASPVPEI 930
Query: 176 QRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLGWKM 235
QRTNLGNVV FDFMDPPPQDNILNSMYQLWVL ALNNVG LT+LGWKM
Sbjct: 931 QRTNLGNVVLLLKSLKVENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGGLTELGWKM 990
Query: 236 VEF 238
VEF
Sbjct: 991 VEF 993
Score = 63.5 bits (153), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/27 (81%), Positives = 25/27 (92%)
Query: 301 VYLQWKEHQYRGDWCNDHFLHIKGLRR 327
VY QWK+H YRGDWCNDHFLH+KGLR+
Sbjct: 1058 VYQQWKQHDYRGDWCNDHFLHVKGLRK 1084
>IMGA|Medtr1g143710.1 Helicase, C-terminal; ATP-dependent helicase
HrpB; Nucleic acid-binding, OB-fold, subgroup;
chr01_pseudomolecule_IMGAG_V3 31824493-31821115 E
EGN_Mt090430 20090702
Length = 1027
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 103/215 (47%), Gaps = 2/215 (0%)
Query: 115 CKMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPE 174
K VYN + G+D+L + P+S+ +A Q AGRA RT CY LYTESAY NEM P+ +PE
Sbjct: 796 AKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTAIPE 855
Query: 175 IQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLGWK 234
IQR NLG FDF+DPP ++++M QL+ L AL++ G LT LG K
Sbjct: 856 IQRINLGMTTLSMKAMGINDLLSFDFLDPPSPQALISAMEQLYSLGALDDEGLLTKLGRK 915
Query: 235 MVEFHQTLHLLRCCXWESNWDAXMRFXRLXXXXXXXXXXXAPKIEQRKV-MLRGRXXXXX 293
M EF L + + + P+ +Q + + R
Sbjct: 916 MAEFPMDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKKARFFQAE 975
Query: 294 XX-XXXXXVYLQWKEHQYRGDWCNDHFLHIKGLRR 327
VY WK + G WC ++F+ + LRR
Sbjct: 976 GDHLTLLAVYESWKSKNFSGPWCFENFVQSRSLRR 1010
>IMGA|Medtr6g067330.1 Helicase, C-terminal;
chr06_pseudomolecule_IMGAG_V3 12473197-12467755 E
EGN_Mt090430 20090702
Length = 985
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 75/126 (59%), Gaps = 2/126 (1%)
Query: 115 CKMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPE 174
CKMK YN R GM++L V P+S+ +A Q AGR+ RT C+ LYT ++ N+M + PE
Sbjct: 631 CKMKSYNPRTGMESLLVTPISKASAMQRAGRSGRTGPGKCFRLYTSYSFQNDMEDNTTPE 690
Query: 175 IQRTNLGNVVXXXXXXXXXXXX--XFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLG 232
IQRTNL NVV F+FMDPPP D + N++ L L ALN +LT +G
Sbjct: 691 IQRTNLANVVLTLISLGIEIEKLFQFEFMDPPPLDALKNAVELLCNLGALNGHVKLTKVG 750
Query: 233 WKMVEF 238
+M EF
Sbjct: 751 RRMAEF 756
>IMGA|Medtr1g106350.1 Helicase, C-terminal;
chr01_pseudomolecule_IMGAG_V3 22156278-22151644 F
EGN_Mt090430 20090702
Length = 721
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 72/124 (58%)
Query: 115 CKMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPE 174
K KVYN R+ +++L V P+S+ +A Q +GRA RT C+ LYTE ++ N++ P PE
Sbjct: 365 AKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLQPQTYPE 424
Query: 175 IQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLGWK 234
I R+NL N V FDFMDPP + ++ ++ L L AL++ G LT LG
Sbjct: 425 ILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTKLGEI 484
Query: 235 MVEF 238
M EF
Sbjct: 485 MSEF 488
>IMGA|Medtr4g130310.1 Helicase, C-terminal;
chr04_pseudomolecule_IMGAG_V3 31251370-31253518 E
EGN_Mt090430 20090702
Length = 671
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 71/124 (57%)
Query: 115 CKMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPE 174
K KVYN R +++L V P+S+ +A Q +GRA RT CY LYTE ++ N++ P PE
Sbjct: 333 AKQKVYNPRTRVESLLVSPISKASAHQRSGRAGRTQPGKCYRLYTEISFSNDLQPQTYPE 392
Query: 175 IQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLGWK 234
I R+NL N V FDFMDPP + ++ ++ L L A+++ G LT LG
Sbjct: 393 ILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGAIDDEGNLTKLGEI 452
Query: 235 MVEF 238
M EF
Sbjct: 453 MSEF 456
>IMGA|Medtr3g069120.1 Helicase, C-terminal;
chr03_pseudomolecule_IMGAG_V3 16470764-16474149 E
EGN_Mt090430 20090702
Length = 693
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 72/125 (57%)
Query: 114 VCKMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVP 173
+ K KVYN R +++L V P+S+ +A Q +GRA RT C+ LYTE ++ N++ P P
Sbjct: 365 LAKQKVYNPRARVESLLVSPISKASAVQRSGRAGRTQPGKCFRLYTERSFNNDLQPQTYP 424
Query: 174 EIQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLGW 233
EI R+NL N V FDFMDPP + ++ ++ L L A+++ G LT LG
Sbjct: 425 EILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGAMDDEGNLTKLGK 484
Query: 234 KMVEF 238
M EF
Sbjct: 485 IMSEF 489
>IMGA|Medtr5g083120.1 Helicase, C-terminal;
chr05_pseudomolecule_IMGAG_V3 31491502-31495450 E
EGN_Mt090430 20090702
Length = 907
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 66/123 (53%), Gaps = 17/123 (13%)
Query: 116 KMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPEI 175
KMK YN R GM++L V P+S+ +A Q AGR+ RT C+ LYT ++ N++ + PEI
Sbjct: 506 KMKCYNPRTGMESLLVTPISKASAMQRAGRSGRTGPGKCFRLYTAYSFQNDLDDNTTPEI 565
Query: 176 QRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLGWKM 235
QRTNL NVV ++M L+ L ALN G+LT +G +M
Sbjct: 566 QRTNLANVVLTLNSLGQK-----------------DAMELLYNLGALNGHGKLTKVGKRM 608
Query: 236 VEF 238
EF
Sbjct: 609 AEF 611
>IMGA|Medtr2g018740.1 Helicase, C-terminal
chr02_pseudomolecule_IMGAG_V3 5013334-5020938 E
EGN_Mt090430 20090702
Length = 505
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 115 CKMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPE 174
K + YN ++ L V P+SR +A Q AGRA R CY LYTE +LN M +PE
Sbjct: 171 SKQRFYNPISDIENLVVAPISRASARQRAGRAGRVRPGKCYRLYTEEFFLNHMSNEGIPE 230
Query: 175 IQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTD-LGW 233
IQR+NL + V FD+ P + ++ ++ L+ L L++ +LT G+
Sbjct: 231 IQRSNLVSCVIQLKALGIDNILGFDWPASPSPEAMIRALEVLYSLGILDDDAKLTSPTGF 290
Query: 234 KMVEF 238
++ E
Sbjct: 291 QVAEI 295
>IMGA|Medtr3g005610.1 Helicase, C-terminal; Zinc finger, RING-type;
Zinc finger, C6HC-type; Zinc finger, C2H2-type;
chr03_pseudomolecule_IMGAG_V3 348251-355515 H
EGN_Mt090430 20090702
Length = 1731
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 120 YNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPEIQRTN 179
++ GM+ L+V +S+++A Q AGRA RT+ CY LY+E+ Y M + PEI+R +
Sbjct: 566 FDPSSGMNVLKVCWISQSSAKQRAGRAGRTEPGRCYRLYSEADY-QSMETNQDPEIRRVH 624
Query: 180 LGNVVXXXXXXXXXXXXXFDFMDPPPQDNI---LNSMYQLWVLSALNNVGRLTDLGWKMV 236
LG V FDF+D P +I + ++ QL + N+V LT G ++
Sbjct: 625 LGVAVLKILALGVKNVQDFDFVDAPSTSSIERAIGNLIQLGAIKLNNDVYELTPEGRRLA 684
>IMGA|Medtr3g102250.1 von Willebrand factor, type C; Helicase,
C-terminal; Zinc finger, RING-type; Zinc finger,
C6HC-type; Zinc finger, C2H2-type;
chr03_pseudomolecule_IMGAG_V3 24886302-24892770 E
EGN_Mt090430 20090702
Length = 1712
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
Query: 125 GMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPEIQRTNLGNVV 184
GM+ L+V +S+++A+Q AGRA RT+ CY +Y+E+ Y M + PEI+R +LG V
Sbjct: 572 GMNVLKVCWISQSSANQRAGRAGRTEPGRCYRMYSEADY-RSMELNQEPEIRRVHLGVAV 630
Query: 185 XXXXXXXXXXXXXFDFMDPPPQDNI---LNSMYQLWVLSALNNVGRLTDLG 232
FDF+D P +I + ++ QL + NNV LT G
Sbjct: 631 LKILALGVKNVQDFDFVDAPSPSSIEMAIRNLIQLGFIKLNNNVHELTYEG 681
>IMGA|Medtr8g138550.1 Sec1-like protein; Helicase, C-terminal;
chr08_pseudomolecule_IMGAG_V3 33544814-33538356 E
EGN_Mt090430 20090702
Length = 1183
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%)
Query: 116 KMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPEI 175
K+K Y+ GM+ +V +S+ +A Q AGRA RT CY LY+ +A+ NE E+
Sbjct: 599 KVKNYDSSNGMETYEVKWISKASAAQRAGRAGRTAAGHCYRLYSSAAFSNEFPEFSPAEV 658
Query: 176 QRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLGWKM 235
++ + VV F F ++L + L L AL++ LT LG M
Sbjct: 659 EKVPVHGVVLLLKSMQIKKVANFPFPTSLKAASLLEAENCLRALEALDSKDELTLLGKAM 718
Query: 236 V 236
Sbjct: 719 A 719
>IMGA|Medtr4g024790.1 Helicase, C-terminal;
chr04_pseudomolecule_IMGAG_V3 5744940-5738479 E
EGN_Mt090430 20090702
Length = 1331
Score = 55.5 bits (132), Expect = 5e-08, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 56/120 (46%)
Query: 116 KMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPEI 175
K+K Y+ GM+ +V +S+ +A Q AGRA RT CY LY+ +A+ NE E+
Sbjct: 746 KVKNYDSSNGMETYEVKWISKASAAQRAGRAGRTAAGHCYRLYSSAAFSNEFPEFSPAEV 805
Query: 176 QRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLGWKM 235
++ + VV F F ++L + L L AL++ LT LG M
Sbjct: 806 EKVPVHGVVLLLKSMQIKKVANFPFPTSLKAASLLEAENCLRALEALDSKDELTLLGKAM 865