Jatropha Genome Database

JcCB0212851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0212851.10 - phase: 1 /pseudo
         (237 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC233662_37.1 Arginine biosynthesis protein ArgJ AC233662.1...   355   1e-98

>IMGA|AC233662_37.1 Arginine biosynthesis protein ArgJ AC233662.1
           191889-184516 E EGN_Mt090430 20090702
          Length = 470

 Score =  355 bits (910), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 180/218 (82%), Positives = 197/218 (90%)

Query: 1   GVTAAKGFKAAGIYGGLRAQGNKPDLALVTCDVDAAAAGAFTTNMVAAAPVLYCKNALDI 60
           GVTAA+GFKAAGIYGGLRA G KPDLALVTCDVDA +AG+FTTN+VAAAPVLYCK+ LDI
Sbjct: 67  GVTAAEGFKAAGIYGGLRAVGEKPDLALVTCDVDAISAGSFTTNVVAAAPVLYCKSTLDI 126

Query: 61  SKTARAVLINAGQANAATGDAGYQDVLECADALAKVLNLKQEEVLIESTGVIGHRIKKEA 120
           S TARAVL NAGQANAATG+AGY+D++EC ++LAK+L +K EEVLIESTGVIG RIKK A
Sbjct: 127 SNTARAVLTNAGQANAATGEAGYRDMIECVESLAKLLGVKPEEVLIESTGVIGQRIKKGA 186

Query: 121 LLNALPELVNSLTSSLEGAGSAAVAITTTDLVSKSVAIESQVGDMSVRVGGMAKGSGMIH 180
           LLN+LP LVNSLTSS EGA SAAVAITTTDLVSKSVAIES VG   VR+GGMAKGSGMIH
Sbjct: 187 LLNSLPLLVNSLTSSDEGADSAAVAITTTDLVSKSVAIESLVGRTKVRIGGMAKGSGMIH 246

Query: 181 PNMATMLGVITTDALVEADVWRKMVLIAVNRSFNQITV 218
           PNMATMLGVITTDA V +DVWRKMV +AVNRSFNQITV
Sbjct: 247 PNMATMLGVITTDAGVTSDVWRKMVQVAVNRSFNQITV 284