Jatropha Genome Database

JcCB0212191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0212191.10 + phase: 0 /partial
         (109 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g127630.1 Replication factor A protein 3 chr07_pseudo...   105   7e-24

>IMGA|Medtr7g127630.1 Replication factor A protein 3
           chr07_pseudomolecule_IMGAG_V3 29974890-29972198 E
           EGN_Mt090430 20090702
          Length = 166

 Score =  105 bits (261), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 69/89 (77%), Gaps = 1/89 (1%)

Query: 1   MDTSKPAIFVNGGLLPMHLRKRVRTVVQVLGSDRGSVIGKTTDDHQLVVKGTPPSAALTN 60
           MD   PA+ VN  LLP ++ +RVRTV+QV+ SD  +VIGK+ D+ QL+VKG+PP A LT+
Sbjct: 61  MDPLSPAVIVNAELLPFYVGRRVRTVMQVVRSDVLAVIGKSPDEKQLIVKGSPP-APLTS 119

Query: 61  FVEVIGIAESDKSIQAEIWTSFGDTFGII 89
           FVEVIGI  SDKSI+AE+WT+FGD   ++
Sbjct: 120 FVEVIGIVNSDKSIKAELWTNFGDEIDML 148