Jatropha Genome Database

JcCB0211371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0211371.10 + phase: 0 /partial
         (180 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g137090.1 hypothetical protein chr03_pseudomolecule_I...   160   2e-40
IMGA|Medtr1g149420.1 hypothetical protein chr01_pseudomolecule_I...   154   3e-38

>IMGA|Medtr3g137090.1 hypothetical protein
           chr03_pseudomolecule_IMGAG_V3 34705464-34701660 E
           EGN_Mt090430 20090702
          Length = 619

 Score =  160 bits (406), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 86/165 (52%), Positives = 116/165 (70%), Gaps = 6/165 (3%)

Query: 1   TAIFNPEKFENLKGAMSFDDIWEDISSITE-----EYDHKVYIVSWNDHFFVLKADLDAY 55
           T  F+PEKF  L+GAMSFD+IW +I++I       +++ ++YIVSWNDHFF+LK ++DAY
Sbjct: 433 TGFFSPEKFHCLEGAMSFDEIWNEINNINNKNTVVDFEPRIYIVSWNDHFFILKVEVDAY 492

Query: 56  YIIDSLGERLFEGCNQAYILKFDESTIMYEKVRK-EIDSEEQTAAEKGKDEQDTQEIICK 114
           YIIDSLGERLFEGC +A++LKFD+S +MY KV K E +  +    +     +++ EI+C+
Sbjct: 493 YIIDSLGERLFEGCQRAFVLKFDDSCVMYGKVDKNEEEVNKDVGTKSSSRGEESFEIVCR 552

Query: 115 GKECCKEFIKRFLAAIPXXXXXXXXXXRKVSTFSLLQRLQIDFHY 159
           GKECCKEFIKRFLAAI             VS   L ++LQIDFH+
Sbjct: 553 GKECCKEFIKRFLAAISVRQLEKEEKKWSVSNPYLHRQLQIDFHF 597


>IMGA|Medtr1g149420.1 hypothetical protein
           chr01_pseudomolecule_IMGAG_V3 32982396-32978402 F
           EGN_Mt090430 20090702
          Length = 753

 Score =  154 bits (389), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 84/198 (42%), Positives = 118/198 (59%), Gaps = 40/198 (20%)

Query: 2   AIFNPE-----KFENLKGAMSFDDIWEDISSI----TEEYDHKVYIVSWNDHFFVLKADL 52
             F+PE     +F+ L GAMSFD+IW++IS+     T   + +++I+SWNDHFF+LK + 
Sbjct: 531 GFFHPEGMDEGRFDFLHGAMSFDNIWDEISNAGNDSTCNNEPRIFIISWNDHFFILKVEA 590

Query: 53  DAYYIIDSLGERLFEGCNQAYILKFDESTIMYE--------------------------- 85
           D+Y IID+LGERL+EGCNQAYILKFD +T++Y+                           
Sbjct: 591 DSYCIIDTLGERLYEGCNQAYILKFDSNTVIYKMPNVTQSSVENTTGEQQTVADVLEHND 650

Query: 86  -KVRKEIDSEEQTAAEKG---KDEQDTQEIICKGKECCKEFIKRFLAAIPXXXXXXXXXX 141
            +V++  D E ++ AE G   K E++  E++CKGKE CKE+IK FLAAIP          
Sbjct: 651 RQVQQINDKELESGAEAGDQSKSEREEDEVLCKGKEACKEYIKSFLAAIPIRELQADVKK 710

Query: 142 RKVSTFSLLQRLQIDFHY 159
             +S+  L  RLQI+FHY
Sbjct: 711 GLISSTPLHHRLQIEFHY 728