Jatropha Genome Database

JcCB0209291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0209291.10 + phase: 0 /partial
         (166 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g146710.1 Pex2 / Pex12, N-terminal chr01_pseudomolecu...   199   4e-52

>IMGA|Medtr1g146710.1 Pex2 / Pex12, N-terminal
           chr01_pseudomolecule_IMGAG_V3 32511257-32507572 E
           EGN_Mt090430 20090702
          Length = 370

 Score =  199 bits (507), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 108/165 (65%), Positives = 131/165 (79%), Gaps = 2/165 (1%)

Query: 1   MLFQVGGQGTRPTFFEMAAAQQLPASLRAALTYSIGVLALRRPLLHKVLDYEDEFFALLM 60
           MLFQVGGQG+RPTFFEMAAA+QLP SLRAALTYSIGVLALR P LHK+LDYE E F+LLM
Sbjct: 1   MLFQVGGQGSRPTFFEMAAAEQLPRSLRAALTYSIGVLALRTPFLHKLLDYEHESFSLLM 60

Query: 61  LVLETHSLRITDASFSESLYGLRRRAVKIKAKNLSSGEAIELSGLQKHQRVLSVAFLVVL 120
           LVLE HSLR TDASFSESLYGLRRR   IK  +  +  +   S L++ Q++LS+ FLVVL
Sbjct: 61  LVLEAHSLRTTDASFSESLYGLRRRPANIKLND--NDSSSSSSQLRRRQKLLSLLFLVVL 118

Query: 121 PYFKSKLHSIYNKERDARLQSSLWGDDAIFENFDSHRGEDPLVSR 165
           PY KSKLHSIYNKER+AR+Q+++WGD+     F++      L+++
Sbjct: 119 PYLKSKLHSIYNKEREARIQATIWGDENESYTFNARASVTTLITK 163