Jatropha Genome Database

JcCB0205901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0205901.10 + phase: 0 /partial
         (640 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g025160.1 2-oxoglutarate dehydrogenase, E1 component ...  1171   0.0  
IMGA|Medtr8g074090.1 Dehydrogenase, E1 component chr08_pseudomol...    49   7e-06

>IMGA|Medtr7g025160.1 2-oxoglutarate dehydrogenase, E1 component
           chr07_pseudomolecule_IMGAG_V3 6058895-6053003 E
           EGN_Mt090430 20090702
          Length = 1023

 Score = 1171 bits (3030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/643 (86%), Positives = 598/643 (93%), Gaps = 6/643 (0%)

Query: 1   MAWFRAGTNVARLAIKRTLCQ--SGSY-TTRVRFIPS-QSRYFHTTVFKSKAQTAPVPRP 56
           MAWFRAG ++A+ AIKRT+ Q  S SY  +R R +PS   R FHTTVFK +A  APVPR 
Sbjct: 1   MAWFRAGASIAKNAIKRTISQNRSSSYLVSRSRILPSTHGRKFHTTVFKQQA--APVPRA 58

Query: 57  VPLSRLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQAATSPGISGQTIQ 116
           VPLSRLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQA+TSPGISGQTIQ
Sbjct: 59  VPLSRLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQASTSPGISGQTIQ 118

Query: 117 ESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPEDLDPALYGFTEADLDREFFLGVWRMS 176
           ESMRLLL+VRAYQVNGHMKAKLDPL LE R+IP+DLDPALYGF+EADLDREFFLGVWRM+
Sbjct: 119 ESMRLLLMVRAYQVNGHMKAKLDPLNLEARQIPDDLDPALYGFSEADLDREFFLGVWRMA 178

Query: 177 GFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHIADRDKCNWLRDKIETPTPMQYNRQRR 236
           GFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHI+DR+KCNWLRDKIETPTP+Q+NR+RR
Sbjct: 179 GFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNWLRDKIETPTPVQFNRERR 238

Query: 237 EVILDRLIWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRSADLGVESIVIGMPH 296
           E I DRL WS+ FENFLATKWT+AKRFGLEGGETLIPGMKEMFDR++DLGVESIVIGM H
Sbjct: 239 EAIFDRLAWSSLFENFLATKWTSAKRFGLEGGETLIPGMKEMFDRASDLGVESIVIGMAH 298

Query: 297 RGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIH 356
           RGRLNVLGNVVRKPLRQIF EFSGG  P DEVGLYTGTGDVKYHLGTSYDRPTRGGKRIH
Sbjct: 299 RGRLNVLGNVVRKPLRQIFCEFSGGLSPEDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIH 358

Query: 357 LSLVANPSHLEAVDPVVVGKTRAKQYYSQDADRTKNMGILIHGDGSFAGQGVVYETLHLS 416
           LSLVANPSHLEAVDPVVVGKTRAKQYYS D DRTKNMGIL+HGDGSFAGQGVVYETLHLS
Sbjct: 359 LSLVANPSHLEAVDPVVVGKTRAKQYYSNDVDRTKNMGILLHGDGSFAGQGVVYETLHLS 418

Query: 417 ALPNYTTGGTIHIVVNNQVAFTTDPRAGRSSQYCTDVAKALNAPIFHVNGDDVEAVVHAC 476
           ALPNYTTGGTIHIV+NNQVAFTTDP +GRSSQYCTDVAKAL+APIFHVNGDDVEAVVHAC
Sbjct: 419 ALPNYTTGGTIHIVLNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDVEAVVHAC 478

Query: 477 ELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQVIRNHPSALEIYQRKLLES 536
           ELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMY+VIR+HPS LEIYQ+KLLE+
Sbjct: 479 ELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKVIRSHPSTLEIYQKKLLET 538

Query: 537 GQVGDEDIKKIQKKVITILNEEFLASKDYVPKRRDWLSSHWAGFKSPEQLSRVRNTGVKP 596
           G++  +DI KI KKV +ILNEEF ASKDY+PKRRDWLS++W GFKSPEQLSRVRNTGVKP
Sbjct: 539 GELTQDDIDKIHKKVTSILNEEFQASKDYIPKRRDWLSAYWLGFKSPEQLSRVRNTGVKP 598

Query: 597 EILKNVGKAITTLPENFKPHRAVKKVYEHRAQMIETGEGIDWA 639
           EILK VGKAITT+PENF PH+AVK++YE RAQMIETGE IDW 
Sbjct: 599 EILKTVGKAITTIPENFTPHKAVKRIYEQRAQMIETGEDIDWG 641


>IMGA|Medtr8g074090.1 Dehydrogenase, E1 component
           chr08_pseudomolecule_IMGAG_V3 14677469-14685386 F
           EGN_Mt090430 20090702
          Length = 395

 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 91/185 (49%), Gaps = 12/185 (6%)

Query: 383 YSQDADRTKNMGILIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAF-TTDP 441
           + Q  ++  N+   ++GDG+ A QG ++E L+++AL +      I +  NN     T + 
Sbjct: 185 FGQKYNKDPNVTFTLYGDGA-ANQGQLFEALNIAALWDLPA---ILVCENNHYGMGTAEW 240

Query: 442 RAGRSSQYCTDVAKALNAPIFHVNGDDVEAVVHACELAAEWRQTFHSDVVVDLVCYRRFG 501
           R+ +S  Y     +   AP   V+G DV AV  AC+ A E     +  +++++  YR  G
Sbjct: 241 RSAKSPAY---YKRGDYAPGLKVDGMDVLAVKQACKFAKE-HALKNGPLILEMDTYRYHG 296

Query: 502 HNEIDEPSFTQPKMYQV--IRNHPSALEIYQRKLLESGQVGDEDIKKIQKKVITILNEEF 559
           H+ + +P  T     ++  +R     +E  ++ +L      ++++K I+K+    ++E  
Sbjct: 297 HS-MSDPGSTYRTRDEISGVRQERDPIERVRKLVLAHDISTEKELKDIEKEARKQVDEAI 355

Query: 560 LASKD 564
             +K+
Sbjct: 356 AKAKE 360