Jatropha Genome Database

JcCB0204821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0204821.10 - phase: 2 /pseudo/partial
         (244 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g101130.1 EPS15 homology (EH); Dynamin chr05_pseudomo...   348   2e-96
IMGA|Medtr2g029240.1 EPS15 homology (EH); Dynamin; Actin-binding...   346   5e-96
IMGA|Medtr8g147510.1 EPS15 homology (EH); Dynamin chr08_pseudomo...   346   8e-96

>IMGA|Medtr5g101130.1 EPS15 homology (EH); Dynamin
           chr05_pseudomolecule_IMGAG_V3 40458795-40464475 E
           EGN_Mt090430 20090702
          Length = 557

 Score =  348 bits (892), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 170/191 (89%), Positives = 178/191 (93%), Gaps = 5/191 (2%)

Query: 51  TSSDFDAKPMVMLLGQYSTGKTTFIKHLLKTSYPGAHIGPEPTTDRFVVVMSGTDERSIP 110
           T+SDFDAKPMVMLLGQYSTGKTTFIKHLLK     AHIGPEPTTDRFVVVMSG DERSIP
Sbjct: 206 TNSDFDAKPMVMLLGQYSTGKTTFIKHLLKC----AHIGPEPTTDRFVVVMSGPDERSIP 261

Query: 111 GNTVAVQADMPFNGLTTFGTAFLSKFECSQMPHPLLEHITFVDTPGVLSGEKQRTQRAYD 170
           GNTVAVQADMPF+GLTTFGTAFLSKFECSQMPHPLLEHITFVD+PGVLSGEKQRTQRAYD
Sbjct: 262 GNTVAVQADMPFSGLTTFGTAFLSKFECSQMPHPLLEHITFVDSPGVLSGEKQRTQRAYD 321

Query: 171 FTGVTSWFAAKCDLILLLFDPHKLDVSDEFKRVISSLRGHDDKIRVVLNKADQVDTQQVR 230
           FTGVTSWFAAKCDLILLLFDPHKLD+SDEF RVISSLRGHDDKIRVVLNKADQVDTQQ+ 
Sbjct: 322 FTGVTSWFAAKCDLILLLFDPHKLDISDEFNRVISSLRGHDDKIRVVLNKADQVDTQQLM 381

Query: 231 ILFNNVLFWTL 241
            ++   L W+L
Sbjct: 382 RVY-GALMWSL 391


>IMGA|Medtr2g029240.1 EPS15 homology (EH); Dynamin; Actin-binding,
           actinin-type chr02_pseudomolecule_IMGAG_V3
           7748883-7753752 E EGN_Mt090430 20090702
          Length = 540

 Score =  346 bits (888), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 162/194 (83%), Positives = 178/194 (91%), Gaps = 1/194 (0%)

Query: 51  TSSDFDAKPMVMLLGQYSTGKTTFIKHLLKTSYPGAHIGPEPTTDRFVVVMSGTDERSIP 110
           T+SDFDAKPMVMLLGQYSTGKTTFIKHLLK  YPGAHIGPEPTTDRFVVVMSG DERSIP
Sbjct: 185 TNSDFDAKPMVMLLGQYSTGKTTFIKHLLKCDYPGAHIGPEPTTDRFVVVMSGPDERSIP 244

Query: 111 GNTVAVQADMPFNGLTTFGTAFLSKFECSQMPHPLLEHITFVDTPGVLSGEKQRTQRAYD 170
           GNT+AV ADMPFNGLTTFG +FLSKFECSQMPHPLL+ +T VDTPGVLSGEKQRTQR+YD
Sbjct: 245 GNTIAVNADMPFNGLTTFGGSFLSKFECSQMPHPLLDEVTIVDTPGVLSGEKQRTQRSYD 304

Query: 171 FTGVTSWFAAKCDLILLLFDPHKLDVSDEFKRVISSLRGHDDKIRVVLNKADQVDTQQVR 230
           FTGV SWFAAKCD+ILLLFDPHKLD+SDEFKRVISSLRG++DKIRVVLNK+DQVDTQQ+ 
Sbjct: 305 FTGVVSWFAAKCDVILLLFDPHKLDISDEFKRVISSLRGNEDKIRVVLNKSDQVDTQQLM 364

Query: 231 ILFNNVLFWTLHCI 244
            ++   L W+L  +
Sbjct: 365 RVY-GALMWSLGKV 377


>IMGA|Medtr8g147510.1 EPS15 homology (EH); Dynamin
           chr08_pseudomolecule_IMGAG_V3 36336789-36341831 E
           EGN_Mt090430 20090702
          Length = 542

 Score =  346 bits (887), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 163/191 (85%), Positives = 176/191 (92%), Gaps = 1/191 (0%)

Query: 51  TSSDFDAKPMVMLLGQYSTGKTTFIKHLLKTSYPGAHIGPEPTTDRFVVVMSGTDERSIP 110
           T SDFDAKPMVMLLGQYSTGKTTFIKHLL+  YPGAHIGPEPTTDRFV VMSGTDERSIP
Sbjct: 187 TDSDFDAKPMVMLLGQYSTGKTTFIKHLLRCEYPGAHIGPEPTTDRFVAVMSGTDERSIP 246

Query: 111 GNTVAVQADMPFNGLTTFGTAFLSKFECSQMPHPLLEHITFVDTPGVLSGEKQRTQRAYD 170
           GNTVAV A MPF+GLTTFG++FLSKF+CSQMPHPLL+ ITFVDTPGVLSGEKQRTQR+YD
Sbjct: 247 GNTVAVDASMPFSGLTTFGSSFLSKFQCSQMPHPLLDEITFVDTPGVLSGEKQRTQRSYD 306

Query: 171 FTGVTSWFAAKCDLILLLFDPHKLDVSDEFKRVISSLRGHDDKIRVVLNKADQVDTQQVR 230
           FTGV SWFAAKCDLILLLFDPHKLD+SDEFKRVI SLRGHDDKIRVVLNKADQ+DTQQ+ 
Sbjct: 307 FTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIYSLRGHDDKIRVVLNKADQIDTQQLM 366

Query: 231 ILFNNVLFWTL 241
            ++   L W+L
Sbjct: 367 RVY-GALMWSL 376