Jatropha Genome Database

JcCB0203531.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0203531.20 - phase: 0 
         (269 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g005510.1 Tetratricopeptide-like helical chr04_pseudo...   154   3e-38
IMGA|Medtr8g120620.1 Tetratricopeptide-like helical chr08_pseudo...   144   5e-35
IMGA|Medtr7g116900.1 RNA-processing protein, HAT helix chr07_pse...   117   7e-27
IMGA|Medtr7g117700.1 Tetratricopeptide-like helical chr07_pseudo...   112   2e-25
IMGA|Medtr5g029790.1 Tetratricopeptide-like helical chr05_pseudo...   108   3e-24
IMGA|Medtr2g126460.1 Tetratricopeptide-like helical chr02_pseudo...   106   9e-24
IMGA|Medtr1g087320.1 Tetratricopeptide-like helical chr01_pseudo...    98   4e-21
IMGA|Medtr5g089500.1 Tetratricopeptide-like helical chr05_pseudo...    76   2e-14

>IMGA|Medtr4g005510.1 Tetratricopeptide-like helical
           chr04_pseudomolecule_IMGAG_V3 268248-270933 E
           EGN_Mt090430 20090702
          Length = 253

 Score =  154 bits (390), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 73/118 (61%), Positives = 90/118 (76%), Gaps = 1/118 (0%)

Query: 127 FWDLSHERMDNYYQIMIETYPGDALLLANYAKFLKEVRGDNVKAEKVCEKALMANARDGD 186
           F D   +R+D YYQ MIE +P DALLL NY KFLKEV GD  KAE+  E+A++AN  DG 
Sbjct: 116 FNDHGRDRLDAYYQNMIEAHPCDALLLGNYGKFLKEVCGDYAKAEECLERAILANPGDGH 175

Query: 187 VLSMYGDLIWNNHKDNARAQTYFDEAVQSSPDDCYVLASYARFLWDAGEEEEEKEIQL 244
           V+S+Y DLIW   K+ ARAQ YFD+A+QS P+DCYVLASYA+FLWDA E EE+K+ Q+
Sbjct: 176 VMSIYADLIWETKKNAARAQQYFDQAIQSDPNDCYVLASYAKFLWDA-ENEEDKDYQI 232


>IMGA|Medtr8g120620.1 Tetratricopeptide-like helical
           chr08_pseudomolecule_IMGAG_V3 27614060-27615473 F
           EGN_Mt090430 20090702
          Length = 292

 Score =  144 bits (363), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 66/107 (61%), Positives = 82/107 (76%), Gaps = 2/107 (1%)

Query: 127 FWDLSH--ERMDNYYQIMIETYPGDALLLANYAKFLKEVRGDNVKAEKVCEKALMANARD 184
           F D +H  +  D YY+ MIE  PG+ L L NYAK+LKEVR D VKAE+ C +A++AN  D
Sbjct: 152 FGDSNHGNDSTDLYYRTMIEANPGNPLFLGNYAKYLKEVRKDYVKAEEYCGRAILANPND 211

Query: 185 GDVLSMYGDLIWNNHKDNARAQTYFDEAVQSSPDDCYVLASYARFLW 231
           G+VLS+Y DLIW  HKD  RA+TYFD+AV+++PDDCYVLASYA FLW
Sbjct: 212 GNVLSLYADLIWECHKDAPRAETYFDQAVKAAPDDCYVLASYAHFLW 258


>IMGA|Medtr7g116900.1 RNA-processing protein, HAT helix
           chr07_pseudomolecule_IMGAG_V3 27168061-27166019 E
           EGN_Mt090430 20090702
          Length = 353

 Score =  117 bits (292), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 55/124 (44%), Positives = 81/124 (65%), Gaps = 3/124 (2%)

Query: 131 SHERMDNYYQIMIETYPGDALLLANYAKFLKEVRGDNVKAEKVCEKALMANARDGDVLSM 190
           S+  ++ YY+ M++  PG+ L L NYA+FL + + D   AE+   +A++A+  DG+VLS 
Sbjct: 222 SNHGVEEYYKKMVQQNPGNPLFLRNYAQFLYQCKQDREGAEEYYSRAILADPNDGEVLSQ 281

Query: 191 YGDLIWNNHKDNARAQTYFDEAVQSSPDDCYVLASYARFLWDAGEEEEEKEIQLSNLSTC 250
           YG L+W  H+D  RA +YF+ AVQ+SPDD +V A+YA FLWD    EE+++   SN   C
Sbjct: 282 YGKLVWELHRDEERASSYFERAVQASPDDSHVQAAYASFLWDT---EEDEDAAGSNDPQC 338

Query: 251 APSH 254
            P H
Sbjct: 339 LPQH 342


>IMGA|Medtr7g117700.1 Tetratricopeptide-like helical
           chr07_pseudomolecule_IMGAG_V3 27544885-27546819 F
           EGN_Mt090430 20090702
          Length = 363

 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/130 (42%), Positives = 81/130 (62%), Gaps = 4/130 (3%)

Query: 129 DLSHERMDNYYQIMIETYPGDALLLANYAKFLKEVRGDNVKAEKVCEKALMANARDGDVL 188
           D ++  ++ YY+ M++  PG+ L L NYA+FL + + D   AE+   +A++A+  DG+VL
Sbjct: 231 DNNNHGVEQYYKKMVQQNPGNPLFLRNYAQFLYQCKQDLEGAEEYYSRAILADPNDGEVL 290

Query: 189 SMYGDLIWNNHKDNARAQTYFDEAVQSSPDDCYVLASYARFLWDAGEEEEEKEIQLSNLS 248
           S YG L+W  H D  RA +YF+ AVQ+SP+D +V A+YA FLWD  EE +       N S
Sbjct: 291 SQYGKLVWELHHDEERASSYFERAVQASPEDSHVQAAYASFLWDTEEENDAG----YNDS 346

Query: 249 TCAPSHNNLS 258
            C P H +L 
Sbjct: 347 QCLPQHFHLG 356


>IMGA|Medtr5g029790.1 Tetratricopeptide-like helical
           chr05_pseudomolecule_IMGAG_V3 12452991-12450968 E
           EGN_Mt090430 20090702
          Length = 253

 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 68/96 (70%)

Query: 138 YYQIMIETYPGDALLLANYAKFLKEVRGDNVKAEKVCEKALMANARDGDVLSMYGDLIWN 197
           YY+ M+++ P DALLL NY K+L EV  + V+AE+   +A++AN  D ++LS+YG LIW 
Sbjct: 125 YYEEMLKSNPADALLLRNYGKYLHEVEKNMVRAEEYYGRAILANPEDAELLSLYGKLIWE 184

Query: 198 NHKDNARAQTYFDEAVQSSPDDCYVLASYARFLWDA 233
             +D  RA++YFD+A+   PDD  VL SYA F+W+A
Sbjct: 185 MSRDEERAKSYFDQAIHVDPDDSTVLGSYAHFMWEA 220


>IMGA|Medtr2g126460.1 Tetratricopeptide-like helical
           chr02_pseudomolecule_IMGAG_V3 30628671-30630187 E
           EGN_Mt090430 20090702
          Length = 225

 Score =  106 bits (265), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 49/84 (58%), Positives = 61/84 (72%)

Query: 136 DNYYQIMIETYPGDALLLANYAKFLKEVRGDNVKAEKVCEKALMANARDGDVLSMYGDLI 195
           D YYQ MIE  P ++LLL NYAKFLKEVRGD  KAE+  E+A++A+  D D LS+Y DLI
Sbjct: 140 DAYYQNMIEANPNNSLLLGNYAKFLKEVRGDYGKAEEYVERAILASPSDADALSLYADLI 199

Query: 196 WNNHKDNARAQTYFDEAVQSSPDD 219
           W   K+  RA+ YFD A+QS P+D
Sbjct: 200 WQTEKNADRAEAYFDRAIQSDPND 223


>IMGA|Medtr1g087320.1 Tetratricopeptide-like helical
           chr01_pseudomolecule_IMGAG_V3 17571774-17568474 E
           EGN_Mt090430 20090702
          Length = 376

 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 67/109 (61%), Gaps = 1/109 (0%)

Query: 133 ERMDNYYQIMIETYPGDALLLANYAKFLKEVRGDNVKAEKVCEKALMANARDGDVLSMYG 192
           E +  YY+IM+  YP   L+L  YA FL+  +G+   AE+   +A +A+  DG++L  Y 
Sbjct: 127 ENLQEYYKIMVHDYPSHPLILKKYAHFLQ-GKGELQDAEEYFHRATLADPNDGEILMHYA 185

Query: 193 DLIWNNHKDNARAQTYFDEAVQSSPDDCYVLASYARFLWDAGEEEEEKE 241
            L+W NH D  RA  YF+ A ++SP D  VLA+YA FLW+  ++E E E
Sbjct: 186 KLVWENHHDRDRASVYFERAAKASPQDSDVLAAYASFLWETEDDENESE 234



 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 58/101 (57%)

Query: 137 NYYQIMIETYPGDALLLANYAKFLKEVRGDNVKAEKVCEKALMANARDGDVLSMYGDLIW 196
           +Y + MI   P + L L  YA+FL +   D   AE    +A+ A+  DG+ +S Y  L W
Sbjct: 275 DYLKKMINENPNNPLFLKKYAQFLFQSNRDLEAAEDYYSRAISADPSDGETISEYAKLQW 334

Query: 197 NNHKDNARAQTYFDEAVQSSPDDCYVLASYARFLWDAGEEE 237
             H D  +A + F++AV+++P D  VLA+Y  FLW+  +EE
Sbjct: 335 QLHHDQEKALSLFEQAVKATPGDSNVLAAYTCFLWETEDEE 375


>IMGA|Medtr5g089500.1 Tetratricopeptide-like helical
           chr05_pseudomolecule_IMGAG_V3 34783531-34780621 E
           EGN_Mt090430 20090702
          Length = 416

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 65/107 (60%)

Query: 132 HERMDNYYQIMIETYPGDALLLANYAKFLKEVRGDNVKAEKVCEKALMANARDGDVLSMY 191
           +E+ D YY+  I   P ++LLL+NYA+FL  V  DN  AE+  +++++  + + +    Y
Sbjct: 295 YEKTDAYYKKHINLAPYNSLLLSNYAQFLFLVMKDNDGAEEYYKQSVVVESPEAEAYCRY 354

Query: 192 GDLIWNNHKDNARAQTYFDEAVQSSPDDCYVLASYARFLWDAGEEEE 238
           GD +    KDN  A+  + +A+++ P + Y L+ YA FLW+ G ++E
Sbjct: 355 GDFLLWIRKDNWAAELRYLQALEADPGNTYYLSKYASFLWNTGGQQE 401