Jatropha Genome Database

JcCB0203531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0203531.10 + phase: 0 /partial
         (148 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g013800.1 Targeting for Xklp2 chr01_pseudomolecule_IM...    87   4e-18
IMGA|Medtr3g137120.1 Targeting for Xklp2 chr03_pseudomolecule_IM...    74   2e-14
IMGA|Medtr3g137120.2 Targeting for Xklp2 chr03_pseudomolecule_IM...    74   3e-14

>IMGA|Medtr1g013800.1 Targeting for Xklp2
           chr01_pseudomolecule_IMGAG_V3 2698448-2692989 E
           EGN_Mt090430 20090702
          Length = 545

 Score = 86.7 bits (213), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/164 (40%), Positives = 90/164 (54%), Gaps = 23/164 (14%)

Query: 1   IPPTRPKSPKLGRRKSSSPVDSEGNNGENSRPGRLSLDEKVSTNRSAKGPSPIHSKKPQR 60
           IP TR KSPKLGR+K+S+  +S+GN   +SR GRLSL+EKVS + S  G +  H KKP R
Sbjct: 389 IPTTRAKSPKLGRKKTSTNSESDGNGSCSSRQGRLSLNEKVSQSNSPTGVTLAHQKKPLR 448

Query: 61  KSLP-KLPSEK---------------TSLSNATNDEKTPLSKALIKENPPTSNQMTEDAS 104
           KSLP +L SE+               TSLS  T +EKT +  A  +EN    + ++ D +
Sbjct: 449 KSLPTRLASERTNSAAAPTSKATKKDTSLSKGTGEEKTEIVTA-NEEN----STLSSDTN 503

Query: 105 AQKQEAIIPRALASEEIEAQIDEVVVVREQAEPTLLQEPIASEH 148
               +  +P    SEE     D  +VV E  +  L QEPI + H
Sbjct: 504 VALPQNAVPSDKPSEEFHVNGD--IVVEENPQLVLSQEPIMTVH 545


>IMGA|Medtr3g137120.1 Targeting for Xklp2
           chr03_pseudomolecule_IMGAG_V3 34725039-34729330 E
           EGN_Mt090430 20090702
          Length = 442

 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 91/170 (53%), Gaps = 28/170 (16%)

Query: 1   IPPTRPKSPKLGRRKSSSPVDSEGNNGENS--RPGRLSLDEKVSTNRSAKGPSPIHSKKP 58
           IP TR KSPKLGR+KSS+ + SE +   NS  +  RLSLDEKVS N   KG S +  KKP
Sbjct: 275 IPTTRAKSPKLGRKKSST-MSSELDVNSNSSAQQCRLSLDEKVSQNNPTKGISHVQPKKP 333

Query: 59  QRKSL-PKLPSEKTSLSN---------ATNDEKTPLSKALIKENPPTSNQMTEDASAQKQ 108
           QR+SL P+L  E+ S SN         A +DEKT LS   +     T +  T +   +  
Sbjct: 334 QRRSLPPRLTPERISSSNSVTARTSSKAVHDEKTSLSS--VTTEVTTLSVATREEKVEAA 391

Query: 109 EAIIPRALASEEI-------------EAQIDEVVVVREQAEPTLLQEPIA 145
            AI   +  S+E              E+Q++  +V+ ++ +  L+QEPIA
Sbjct: 392 AAIEENSAFSDETSGTPSLNIEPDVAESQLNGDIVIEDKPQLILVQEPIA 441


>IMGA|Medtr3g137120.2 Targeting for Xklp2
           chr03_pseudomolecule_IMGAG_V3 34725039-34729330 E
           EGN_Mt090430 20090702
          Length = 394

 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 91/170 (53%), Gaps = 28/170 (16%)

Query: 1   IPPTRPKSPKLGRRKSSSPVDSEGNNGENS--RPGRLSLDEKVSTNRSAKGPSPIHSKKP 58
           IP TR KSPKLGR+KSS+ + SE +   NS  +  RLSLDEKVS N   KG S +  KKP
Sbjct: 227 IPTTRAKSPKLGRKKSST-MSSELDVNSNSSAQQCRLSLDEKVSQNNPTKGISHVQPKKP 285

Query: 59  QRKSL-PKLPSEKTSLSN---------ATNDEKTPLSKALIKENPPTSNQMTEDASAQKQ 108
           QR+SL P+L  E+ S SN         A +DEKT LS   +     T +  T +   +  
Sbjct: 286 QRRSLPPRLTPERISSSNSVTARTSSKAVHDEKTSLSS--VTTEVTTLSVATREEKVEAA 343

Query: 109 EAIIPRALASEEI-------------EAQIDEVVVVREQAEPTLLQEPIA 145
            AI   +  S+E              E+Q++  +V+ ++ +  L+QEPIA
Sbjct: 344 AAIEENSAFSDETSGTPSLNIEPDVAESQLNGDIVIEDKPQLILVQEPIA 393