Jatropha Genome Database

JcCB0202011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0202011.10 + phase: 0 /partial
         (212 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g124140.1 Armadillo-like helical chr07_pseudomolecule...   164   3e-41
IMGA|Medtr7g124150.1 hypothetical protein chr07_pseudomolecule_I...   112   1e-25

>IMGA|Medtr7g124140.1 Armadillo-like helical
           chr07_pseudomolecule_IMGAG_V3 29101483-29105112 E
           EGN_Mt090430 20090702
          Length = 242

 Score =  164 bits (415), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 75/117 (64%), Positives = 95/117 (81%)

Query: 3   MNTKIRATAFAAFGALSSYGVGAQREIFLEQIHAATPRLVLHLHDDDISVRHACRNTLKH 62
           MN K+RA++FA FGALS+YG+G  +E F+EQ+HAA PRLVLHLHD+D+SVR ACRNTL+ 
Sbjct: 105 MNAKMRASSFAVFGALSNYGIGELKEAFVEQVHAAIPRLVLHLHDEDVSVRLACRNTLRR 164

Query: 63  IAPLMKIEGLASLSNSHCCNSDHRSDYEGFLRDFTRLLTQYLPSRVDSYMASTIQAI 119
           + PLM+IEGL +L N+    SDHRSDYE FLRD  +  TQ+L SRVD+YMAST+Q +
Sbjct: 165 VFPLMEIEGLLALLNTPSFLSDHRSDYEDFLRDIAKQFTQHLLSRVDTYMASTVQVL 221


>IMGA|Medtr7g124150.1 hypothetical protein
           chr07_pseudomolecule_IMGAG_V3 29105114-29105741 E
           EGN_Mt090430 20090702
          Length = 102

 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 68/96 (70%), Gaps = 1/96 (1%)

Query: 116 IQAIDAPWPIIQANXXXXXXXXXXXXDDPRILALYYAQVFGMLVGKMNQSADAVVRATCS 175
           +QA DAPWPIIQAN            D+  ILA Y+ QVFGMLVGKM++S DAVVRATCS
Sbjct: 2   MQAFDAPWPIIQANAMYLSSSMLSLSDNQHILADYHTQVFGMLVGKMSRSPDAVVRATCS 61

Query: 176 SALGLLLRSTNSLSWRTARLDR-DRVESSRRTHDSD 210
           +ALGLLL+S+NS SWR   LDR D   S+ R HD++
Sbjct: 62  AALGLLLKSSNSCSWRAVHLDRLDSSHSTIRNHDTE 97