Jatropha Genome Database

JcCB0201931.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0201931.20 + phase: 0 /partial
         (179 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g143840.1 riboflavin biosynthesis protein-related, pu...   116   7e-27

>IMGA|Medtr1g143840.1 riboflavin biosynthesis protein-related,
           putative chr01_pseudomolecule_IMGAG_V3 31882522-31885577
           E EGN_Mt090430 20090702
          Length = 371

 Score =  116 bits (290), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 21/151 (13%)

Query: 6   SRISLHLRECNLHHHQGFGLGFCSTRFIRLSSFMFRP----SSVTIIGVADSN-CYFPHR 60
           +RIS H R+C L H   FG+GF    F        +P    +++++   ++ N CY    
Sbjct: 7   NRISHHFRDCELLH---FGVGFRFHSFHLSFPRSLKPCLPGNAISVTNRSNENKCY---- 59

Query: 61  LQQRMVXXXXXXXXXPGEIPIMPDC-LSQQEDDNELPSQGLFPLAGGIVALGKFDALHIG 119
                           GEIP++ D   SQQEDD E+ S G+  +AGGIVALGKFDALHIG
Sbjct: 60  --------SSKYSGGAGEIPLLFDSSFSQQEDDREIISDGISAVAGGIVALGKFDALHIG 111

Query: 120 HRELAIQASKVGSPYLLSFVGMAEVLGWEPR 150
           HRELAIQAS+ G P+LLSFVGMA+V GWE R
Sbjct: 112 HRELAIQASRAGPPFLLSFVGMAKVFGWEHR 142