Jatropha Genome Database

JcCB0201851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0201851.10 - phase: 0 /TE/partial
         (323 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr6g077130.1 Zinc finger, CCHC-type chr06_pseudomolecule...    74   1e-13
IMGA|Medtr5g089840.1 copia LTR rider, related chr05_pseudomolecu...    66   2e-11
IMGA|Medtr4g110620.1 polyprotein-like, related chr04_pseudomolec...    54   1e-07
IMGA|Medtr6g036540.1 Zinc finger, CCHC-type chr06_pseudomolecule...    51   8e-07

>IMGA|Medtr6g077130.1 Zinc finger, CCHC-type
           chr06_pseudomolecule_IMGAG_V3 15158354-15162093 E
           EGN_Mt090430 20090702
          Length = 532

 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 132/322 (40%), Gaps = 33/322 (10%)

Query: 5   TSKMISLNGAKYHIWRNKMRDLLMVTKMHLPVFGSSKLEDKTD----EEWAFEHEQVCGY 60
            S++    G  +  W  ++  LL V  +   +      E K+D    E+W     +VC +
Sbjct: 38  VSRIEVFKGQNFRRWNERVFTLLDVHGVASVLTDVKPDEAKSDAKQIEKWN-NANKVCRH 96

Query: 61  -IRQFVDDNVYNHICNETHARTLWDKLEQLYASKSGNNQLFYLTKLMNFKYQEGTFVADH 119
            I   + D +++  C+   A+ +WD +   Y ++    Q F +                 
Sbjct: 97  TILSTISDALFDVYCSYKVAKDIWDNMNVKYTAEEATKQKFVI----------------- 139

Query: 120 LSEMQVTIHQLSNMGIKFDDKILGLMVLASLPESWETLKISITNSTPHSGVSWEFVKNAV 179
            +E    I +L    I   D  +   ++  LP SW+  K  + +   H  +S   +   +
Sbjct: 140 -NEYHQLIEELKAENIILPDVFVAAALVEKLPSSWDDYKQQLKHK--HKQMSLNDLIRHI 196

Query: 180 LNEEMRRKAQNPSSSQSDIFLADAKRNNQPRGRSQSRSSNTRDKSRGRSNKFVNI---VC 236
           + E+  RK    + +++    A+  +NN    R Q R  N  D +   +N         C
Sbjct: 197 IIEDTSRKECGAARAKALESRANLIQNN---ARKQQRYENKSDHALKVTNPNFKANLGEC 253

Query: 237 HHCGKKGHIKRYCRKFKSDQEKIKGKAKKEESSDDEANVIAEFQLFIEDTINLATQETSW 296
           + CGKKGH   +CR  K + +  K KA   +  D + +        I   ++L      W
Sbjct: 254 YVCGKKGHKAYHCRYRKVNGQPPKPKANLTQGDDKKYDDDDVIAAVIS-KVHLVNDVQKW 312

Query: 297 VIDSGATLHATSRRENFSSYTS 318
           V+DSGAT H  ++RE F+SY S
Sbjct: 313 VVDSGATRHICAKREAFTSYIS 334


>IMGA|Medtr5g089840.1 copia LTR rider, related
           chr05_pseudomolecule_IMGAG_V3 34952559-34951978 H
           EGN_Mt090430 20090702
          Length = 154

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 2/116 (1%)

Query: 79  ARTLWDKLEQLYASKSGNNQLFYLTKLMNFKYQEGTFVADHLSEMQVTIHQLSNMGIKFD 138
            + LW+KLE LY +K  +N+L    +  N +  EGT ++DHLS +   + +L ++ +K D
Sbjct: 18  PKELWEKLEGLYQAKGISNRLLLKEQFHNLRMDEGTKISDHLSTLNNIVSELESIEVKID 77

Query: 139 DKILGLMVLASLPESWETLKISITNSTPHSGVSWEFVKNAVLNEEMRRKAQNPSSS 194
           D+   L ++ SLP S+  LK  +        +S+E V   +++EEM  K+   +SS
Sbjct: 78  DEDKTLRIILSLPPSYVHLKPVLMYG--KESLSFEEVATKIISEEMTMKSDESTSS 131


>IMGA|Medtr4g110620.1 polyprotein-like, related
           chr04_pseudomolecule_IMGAG_V3 25158785-25159321 H
           EGN_Mt090430 20090702
          Length = 178

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 5/149 (3%)

Query: 65  VDDNVYNHICNETHARTLWDKLEQLYASKSGNNQLFYLTKLMNFKYQEGTFVADHLSEMQ 124
           +  N+  ++ N   A+    KLE LY +K  +NQLF   K  N    EGT + +HL  + 
Sbjct: 21  LPKNLPANVQNLRSAKEFCKKLEGLYQAKKISNQLFPKEKFHNLHMDEGTKIFNHLCTLN 80

Query: 125 VTIHQLSNMGIKFDDKILGLMVLASLPESWETLKISITNSTPHSGVSWEFV--KNAVLNE 182
             I +L ++ +K  D+   L ++ SLP  +  LK+ +        +S+E V  K  +++E
Sbjct: 81  DIIFELESIKVKIYDEDKALSLILSLPPFYVHLKLVLMYG--KESLSFEEVATKIKIISE 138

Query: 183 EMRRKAQNPSSSQSDIFLADAKRNNQPRG 211
           E RR   + S+S S + L  +  N +  G
Sbjct: 139 E-RRMKSDESTSSSLMLLTKSGANGKRIG 166


>IMGA|Medtr6g036540.1 Zinc finger, CCHC-type
           chr06_pseudomolecule_IMGAG_V3 8117470-8116658 H
           EGN_Mt090430 20090702
          Length = 270

 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 107/272 (39%), Gaps = 47/272 (17%)

Query: 9   ISLNGAKYHIWRNKMRDLLMVTKMHLPVFGSSK-----LEDKTDEEWAFEHEQVCGYIRQ 63
           I+LNG+ Y+ W   M   L   ++   V G  K     L +K  EEW  ++ Q+  + R+
Sbjct: 12  ITLNGSNYNQWPEAMCGFLKGRRLWRYVTGDKKCPTISLAEKL-EEWDSKNHQIITWCRK 70

Query: 64  FVDDNVYNHICNETHARTLWDKLEQLYASKSGNNQLFYLTKLMNFKYQEGTFVADHLSEM 123
               +++       +A+ +WD L+Q Y     ++Q   L  L N K Q G  V + L++M
Sbjct: 71  TSTPSIHLQFGRFENAKEVWDYLKQRYTISDLSHQYQLLKDLSNLKQQSGQPVYEFLAQM 130

Query: 124 QVTIHQLSNMGIKFDDKILGLMVLASLPESWETLKISITNSTPHSGVSWEFVKNAVLNEE 183
           ++  +QL++              L  LP        ++ N+ P            + +EE
Sbjct: 131 EIIWNQLASCE----------PFLNPLP--------TLENALP-----------CLKSEE 161

Query: 184 MRRKAQNPSSSQSDIFLADAKRNNQPRGRSQSRSSNTRDKSRGRSNKFVNIVCHHCGKKG 243
            R         Q ++  A  K+  +     Q    +  D          N+ CH+C KKG
Sbjct: 162 TRLGLLR---QQDNLAFAVTKKIPKFCRVCQMTGHSFPD--------CPNVECHNCKKKG 210

Query: 244 HI-KRYCRKFKSDQEKIKGKAKKEESSDDEAN 274
           HI    CR  K+    I+    +    D   N
Sbjct: 211 HIASNCCRYCKTPGHLIQNCPTRPPQHDQNKN 242