Jatropha Genome Database

JcCB0200941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0200941.10 + phase: 0 
         (739 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g076870.1 hypothetical protein chr05_pseudomolecule_I...    68   2e-11
IMGA|Medtr5g028110.1 G-protein alpha subunit, group I chr05_pseu...    59   6e-09
IMGA|Medtr5g018540.1 G-protein alpha subunit, group I; Zinc fing...    56   7e-08
IMGA|Medtr5g018540.2 G-protein alpha subunit, group I chr05_pseu...    56   7e-08

>IMGA|Medtr5g076870.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 28209566-28206652 E
           EGN_Mt090430 20090702
          Length = 928

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 11/107 (10%)

Query: 330 PIAGGAPFFTCFNCFGLLQVPKKVLFMGKNQQKIRCGACSTVINFAVVNKKLVLSVNTEA 389
           P+AG APF TC  C  LLQ+P   L   +   K++CGAC  V+ F++ NK  ++S    A
Sbjct: 719 PVAGAAPFVTCHKCLNLLQLPADFLLFRRVCHKLKCGACQKVLKFSLQNKSHIISYTPNA 778

Query: 390 THFPTE-----------VNDSSTEIIKDSTSYSHGQMSRINANFSSD 425
              P+            +N  S   + D  SYS      ++ ++SS+
Sbjct: 779 VGPPSSDLDMKNKPINGINTQSEPHVADRVSYSDDYGHSVSKSYSSE 825


>IMGA|Medtr5g028110.1 G-protein alpha subunit, group I
           chr05_pseudomolecule_IMGAG_V3 11555626-11549939 E
           EGN_Mt090430 20090702
          Length = 839

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 14/141 (9%)

Query: 596 IKKSFKDFSRSNQDERGRSNVSVNGHII-PDRLVKKAEKLAG------PIHPGKYWYDAR 648
           +K+  K     + ++     +SVNG ++ PD +    E+L G       + PG+YWYD  
Sbjct: 242 VKQIMKAEKECSANQLQPEQLSVNGFLLKPDEM----EELLGCPLPPRKLKPGRYWYDKE 297

Query: 649 AGFWGVIGGPCLGIIPPFIEEFDYPMPEDCAGGNTGVFVNGRELHQKDLDLLTGRGLPID 708
           +G WG  G     II   +  F   +  D + GNT V++NGRE+ + +L +L    +   
Sbjct: 298 SGLWGKEGEKPDRIISSNLN-FSGKLSTDASNGNTEVYINGREITKLELRVLRLANVQCP 356

Query: 709 RDRSYIVEISGRVLDEETGEE 729
           RD  + V   GR   EE G++
Sbjct: 357 RDTHFWVYDDGRY--EEEGQK 375


>IMGA|Medtr5g018540.1 G-protein alpha subunit, group I; Zinc finger,
           FYVE/PHD-type chr05_pseudomolecule_IMGAG_V3
           6772454-6766368 E EGN_Mt090430 20090702
          Length = 908

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 616 VSVNGHIIPDRLVKKAEKLAGP---IHPGKYWYDARAGFWGVIGGPCLGIIPPFIEEFDY 672
           + VNG  +    +   +  + P   + PG YWYD  +GFWG  G     II   +     
Sbjct: 332 ICVNGKPLSYEELVTLQNCSNPPKKLKPGNYWYDKVSGFWGKEGQKPSSIISAHLN-VGS 390

Query: 673 PMPEDCAGGNTGVFVNGRELHQKDLDLLTGRGL 705
           P+  D + GNT VFVNGRE+ + +L +L   G+
Sbjct: 391 PIQPDASNGNTQVFVNGREITKVELRMLQLAGV 423


>IMGA|Medtr5g018540.2 G-protein alpha subunit, group I
           chr05_pseudomolecule_IMGAG_V3 6772454-6766368 E
           EGN_Mt090430 20090702
          Length = 907

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 616 VSVNGHIIPDRLVKKAEKLAGP---IHPGKYWYDARAGFWGVIGGPCLGIIPPFIEEFDY 672
           + VNG  +    +   +  + P   + PG YWYD  +GFWG  G     II   +     
Sbjct: 332 ICVNGKPLSYEELVTLQNCSNPPKKLKPGNYWYDKVSGFWGKEGQKPSSIISAHLN-VGS 390

Query: 673 PMPEDCAGGNTGVFVNGRELHQKDLDLLTGRGL 705
           P+  D + GNT VFVNGRE+ + +L +L   G+
Sbjct: 391 PIQPDASNGNTQVFVNGREITKVELRMLQLAGV 423