Jatropha Genome Database

JcCB0200811.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0200811.20 - phase: 0 /pseudo/partial
         (216 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g101000.1 Aspartate carbamoyltransferase chr05_pseudo...    56   1e-08
IMGA|Medtr4g165700.2 Aspartate carbamoyltransferase chr04_pseudo...    50   9e-07
IMGA|Medtr4g165700.1 Aspartate carbamoyltransferase chr04_pseudo...    50   1e-06

>IMGA|Medtr5g101000.1 Aspartate carbamoyltransferase
           chr05_pseudomolecule_IMGAG_V3 40396735-40400400 E
           EGN_Mt090430 20090702
          Length = 384

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 89/191 (46%), Gaps = 19/191 (9%)

Query: 30  SVPVIN-GLTDYNHPCQIMADALTMIEHIGQLEGTKVVYVGD---GNNIVHSWLLLASV- 84
           S+PVIN G     HP Q + D  T+   IG+L+G KV  VGD   G  +     LLA   
Sbjct: 196 SIPVINAGDGPGQHPTQALLDIYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYH 255

Query: 85  -IPFHFVCACPKGFEPDAKTVEKAQLAGISKIEITNDPKEAVVGADVVYSDVWASMGQKE 143
            +  +FV       + D K  E     G+ + E ++D  E     DVVY     +  QKE
Sbjct: 256 DVKIYFVSPNVVKMKDDIK--EYLTSEGV-EWEESSDLMEVASKCDVVYQ----TRIQKE 308

Query: 144 EAAHRRKVFQ----GFQVDEDLMKIAGPKAYFMHCLPAERGVEVTDGVIEAPNSIVFPQA 199
               +  +++     + V++D++K+    A  MH LP    +EV   V   P +  F QA
Sbjct: 309 RFGDKINLYEEARGKYIVNQDVLKVMQNHAVVMHPLPRLDEIEVE--VDSDPRAAYFRQA 366

Query: 200 ENRMHAQNAIM 210
           +N ++ + A++
Sbjct: 367 KNGLYIRMALL 377


>IMGA|Medtr4g165700.2 Aspartate carbamoyltransferase
           chr04_pseudomolecule_IMGAG_V3 41793858-41790366 E
           EGN_Mt090430 20090702
          Length = 325

 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 86/189 (45%), Gaps = 19/189 (10%)

Query: 32  PVIN-GLTDYNHPCQIMADALTMIEHIGQLEGTKVVYVGD---GNNIVHSWLLLASV--I 85
           P++N G     HP Q + D  T+   IG+L+G KV  VGD   G  +     LLA    +
Sbjct: 139 PIVNAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYKDV 198

Query: 86  PFHFVCACPKGFEPDAKTVEKAQLAGISKIEITNDPKEAVVGADVVYSDVWASMGQKEEA 145
             +FV       + D K    ++  G+   E ++D  E     DVVY     +  QKE  
Sbjct: 199 KIYFVSPDVVKMKDDIKDYLTSK--GVD-WEESSDLVEVASECDVVYQ----TRIQKERF 251

Query: 146 AHRRKVFQ----GFQVDEDLMKIAGPKAYFMHCLPAERGVEVTDGVIEAPNSIVFPQAEN 201
             R  +++     + V+++++K     A  MH LP  R  E+T  V   P +  F QA+ 
Sbjct: 252 GERLDLYEKARGKYIVNQNILKAMQRHAVVMHPLP--RLDEITVDVDADPRAAYFRQAKY 309

Query: 202 RMHAQNAIM 210
            ++ + AI+
Sbjct: 310 GLYIRMAIL 318


>IMGA|Medtr4g165700.1 Aspartate carbamoyltransferase
           chr04_pseudomolecule_IMGAG_V3 41793858-41790366 E
           EGN_Mt090430 20090702
          Length = 380

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 86/189 (45%), Gaps = 19/189 (10%)

Query: 32  PVIN-GLTDYNHPCQIMADALTMIEHIGQLEGTKVVYVGD---GNNIVHSWLLLASV--I 85
           P++N G     HP Q + D  T+   IG+L+G KV  VGD   G  +     LLA    +
Sbjct: 194 PIVNAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYKDV 253

Query: 86  PFHFVCACPKGFEPDAKTVEKAQLAGISKIEITNDPKEAVVGADVVYSDVWASMGQKEEA 145
             +FV       + D K    ++  G+   E ++D  E     DVVY     +  QKE  
Sbjct: 254 KIYFVSPDVVKMKDDIKDYLTSK--GVD-WEESSDLVEVASECDVVYQ----TRIQKERF 306

Query: 146 AHRRKVFQ----GFQVDEDLMKIAGPKAYFMHCLPAERGVEVTDGVIEAPNSIVFPQAEN 201
             R  +++     + V+++++K     A  MH LP  R  E+T  V   P +  F QA+ 
Sbjct: 307 GERLDLYEKARGKYIVNQNILKAMQRHAVVMHPLP--RLDEITVDVDADPRAAYFRQAKY 364

Query: 202 RMHAQNAIM 210
            ++ + AI+
Sbjct: 365 GLYIRMAIL 373