Jatropha Genome Database

JcCB0198061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0198061.10 - phase: 0 
         (226 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g107440.1 hypothetical protein chr02_pseudomolecule_I...    74   6e-14

>IMGA|Medtr2g107440.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 25276206-25272816 E
           EGN_Mt090430 20090702
          Length = 597

 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 62/110 (56%), Gaps = 11/110 (10%)

Query: 15  GKIRKRGCXXXXXXXXXIIQNYRFKRAILVGKRGGSSTPVPTWKLMGTARTPSSAL---R 71
            KIRKRGC           + YRFKRAIL+GK+ G +TP P WK   ++++PS A     
Sbjct: 14  NKIRKRGCSSTSSSSPFS-RRYRFKRAILMGKKSGYNTPAPMWK--TSSKSPSMATHHHH 70

Query: 72  AMDSPKYAASQNGGVIKGKLHQQQQAAPVSARKLAATLWEMNEMPSPKMK 121
           AM      +S+ G   K K     +   VSARKLAATLWE+N++   ++K
Sbjct: 71  AMKKTALHSSRTGLPFKEK-----KEISVSARKLAATLWEINDLTPSRIK 115