Jatropha Genome Database

JcCB0192641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0192641.10 + phase: 0 /pseudo
         (234 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g015360.1 Helix-loop-helix DNA-binding chr07_pseudomo...   111   2e-25

>IMGA|Medtr7g015360.1 Helix-loop-helix DNA-binding
           chr07_pseudomolecule_IMGAG_V3 3853072-3859438 E
           EGN_Mt090430 20090702
          Length = 366

 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/147 (45%), Positives = 87/147 (59%), Gaps = 13/147 (8%)

Query: 2   LRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWTSEPTKLMPWRNSHWRVQ 61
           LRDLIP +D KRD ASFLLEVIEY+ +LQEK+Q YE  Y+GW  EPTKL+PWRN H   +
Sbjct: 73  LRDLIPENDSKRDKASFLLEVIEYIHFLQEKLQIYEHPYEGWNQEPTKLIPWRNHHGPSE 132

Query: 62  SFMGHPQTVKNGSGPGLTFPGKFDENNIAISPSMLTSTQNLVEPDTSRDIASKGMERQPE 121
           +     + ++NGS          D  NI +SPS   + QN +  D S  I  KG    P 
Sbjct: 133 NTTDPSRAIQNGS---------VDGKNI-VSPSFPKNVQNPILSDPSTTIP-KGC--TPG 179

Query: 122 LANKVMPLPMSLQTTMPTPVQSDGVVA 148
            + +V+PL M ++  M  PV S G+V 
Sbjct: 180 SSTEVVPLTMQMRLDMFDPVVSGGMVT 206