Jatropha Genome Database

JcCB0192111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0192111.10 + phase: 2 /pseudo/partial
         (263 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g094710.1 3-oxo-5-alpha-steroid 4-dehydrogenase, C-te...   216   9e-57

>IMGA|Medtr5g094710.1 3-oxo-5-alpha-steroid 4-dehydrogenase,
           C-terminal chr05_pseudomolecule_IMGAG_V3
           37494913-37491130 E EGN_Mt090430 20090702
          Length = 310

 Score =  216 bits (550), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 131/254 (51%), Positives = 154/254 (60%), Gaps = 20/254 (7%)

Query: 1   QRPTIPLLXGSKERSVVLNKKKSXGLLXWEDK--ITVVFKDLGPXVSYCIILVFLGVHES 58
           QR T+P+  GSKE+ VVLN KKS       +   +TV FKDLGP VSY  +  F  +   
Sbjct: 44  QRLTLPVQPGSKEKPVVLNYKKSLNDYTSGNSKTLTVTFKDLGPQVSYRTLFFFEYLGPL 103

Query: 59  FRSXXXXXXXXXXXXXXXQGR-TCHQTSXDI----CFLYFKCIMETLFVLXFSHA-PPLC 112
                             +G    H          CF Y K I+ET FV  FSHA  PL 
Sbjct: 104 LLYPVFYYFPVVYQYFGYKGEHVIHPVQTYAMYYWCFHYAKRILETFFVHRFSHATSPLS 163

Query: 113 NVFRNCSSYWTFGCYMAYYVNHPLYAPVSDLQXKIGFWLWF--DLSS--CKLLLPYLVGK 168
           NVFRNC+ YWTFGCY+AYYVNHPLY PVSDLQ KIGF       +S+  C ++L      
Sbjct: 164 NVFRNCAYYWTFGCYIAYYVNHPLYTPVSDLQMKIGFGFGILCQVSNFYCHIIL------ 217

Query: 169 KKKNLCSPDWSGGYQIPRGFLFNMVTCSNYTTEVYQWLGFNIAMQTVAGYFFLVVASMIM 228
             +NL  P   GGYQIPRGFLFN+VTC+NYTTE+YQWLGFNIA QT+AGY FL VA+ IM
Sbjct: 218 --RNLRGPAGEGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTIAGYIFLAVAAFIM 275

Query: 229 TNWAFANHRQLTKV 242
           TNWA A HR+L K+
Sbjct: 276 TNWALAKHRRLKKL 289