Jatropha Genome Database

JcCB0190821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0190821.10 - phase: 0 /pseudo
         (236 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr6g009990.1 Phosphoglucose isomerase (PGI) chr06_pseudo...   345   8e-96
IMGA|Medtr5g074950.1 Phosphoglucose isomerase (PGI) chr05_pseudo...    53   1e-07

>IMGA|Medtr6g009990.1 Phosphoglucose isomerase (PGI)
           chr06_pseudomolecule_IMGAG_V3 1856654-1847350 E
           EGN_Mt090430 20090702
          Length = 568

 Score =  345 bits (886), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 162/207 (78%), Positives = 188/207 (90%)

Query: 1   MASAALICDTHPWKTLKAHVEDIKKTHLRDLMSDSERCKSMVVEFDGIIVDFSRQQATVD 60
           MAS+ LI DT PWK LK HVEDIKKTHLRDL+S+ ER KSM VEFDGI++D+SRQQAT++
Sbjct: 1   MASSTLISDTQPWKDLKDHVEDIKKTHLRDLLSNEERSKSMTVEFDGILLDYSRQQATLE 60

Query: 61  TVDKLYNLAEAAHLKEKIHHMFNGERINTTENRSVLHVALRAPRDAVIKSDGKNVVPDVW 120
           T +KL+ LAEAA LK+KI+ M+NGE IN+TENR+VLHVALRAPRDAVI+SDGKNVVPDVW
Sbjct: 61  TTEKLFKLAEAASLKQKINQMYNGEHINSTENRAVLHVALRAPRDAVIESDGKNVVPDVW 120

Query: 121 NVLDKIKDFSERLRNGSWVGATGKQLTDVIAIGIGGSFLGPLFVHTALQTDPEASKFAKG 180
           NVLDKIK+FSER+R+GSWVGATGK+L DV+AIGIGGSFLGPLFVHTALQT+PEA + A+G
Sbjct: 121 NVLDKIKEFSERVRSGSWVGATGKELKDVVAIGIGGSFLGPLFVHTALQTEPEAIESARG 180

Query: 181 RQLRFLANVDPIDVARNIAGLHPETTL 207
           R LRFLANVDPIDVA+ I GL+PETTL
Sbjct: 181 RTLRFLANVDPIDVAKTITGLNPETTL 207


>IMGA|Medtr5g074950.1 Phosphoglucose isomerase (PGI)
           chr05_pseudomolecule_IMGAG_V3 27150407-27160274 E
           EGN_Mt090430 20090702
          Length = 617

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 26/166 (15%)

Query: 47  GIIVDFSRQQATVDTVDKLYNLAEAAHLKEKIHHMFNGERINTTENRSVLHVALRAPRDA 106
           G+ +D SR   T + V ++    +AA LK  +  +  G   N  E R V H  LR     
Sbjct: 93  GLYLDVSRVGFTDEFVKEMEPRFQAA-LK-AMEELEKGAIANPDEGRMVGHYWLR----- 145

Query: 107 VIKSDGKNVVPDVW------NVLDKIKDFSERLRNGSWVGATGKQ--LTDVIAIGIGGSF 158
                  N  P+++        LD I  F++ + +G     +  +   T ++++GIGGS 
Sbjct: 146 -----DSNRAPNIFLKTQIDKTLDAICGFADDIVSGKIKPPSSPEGRFTQILSVGIGGSA 200

Query: 159 LGPLFVHTALQTDPEASKFAKGRQLRFLANVDPIDVARNIAGLHPE 204
           LGP FV  AL  D    K      +RF+ N DP  +   IA L PE
Sbjct: 201 LGPQFVAEALAPDNPPLK------IRFIDNTDPAGIDHQIAQLGPE 240