Jatropha Genome Database

JcCB0190531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0190531.10 - phase: 0 /partial
         (165 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g097520.1 Transcription factor Tfb4 chr03_pseudomolec...   187   3e-48

>IMGA|Medtr3g097520.1 Transcription factor Tfb4
           chr03_pseudomolecule_IMGAG_V3 23357405-23363002 E
           EGN_Mt090430 20090702
          Length = 275

 Score =  187 bits (474), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 85/109 (77%), Positives = 99/109 (90%)

Query: 57  IQRVFRSGPLNPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCYVGSHNSAFLQ 116
           IQR FRSGP++PQPRILCLQGS DGPEQYVA+MNAIFSAQRS+VP+DSC++GS+NSAFLQ
Sbjct: 134 IQRAFRSGPMHPQPRILCLQGSTDGPEQYVAIMNAIFSAQRSVVPVDSCFIGSNNSAFLQ 193

Query: 117 QASYITGGVYVKPQHLDGLFQYLVTVFATDLHCRSFLQLPRPAGVDFRA 165
           QASYITGG+Y +P  ++GLFQYL TVFATDLH R FL+LP+  GVDFRA
Sbjct: 194 QASYITGGIYYRPPQMEGLFQYLSTVFATDLHSREFLRLPKSLGVDFRA 242