Jatropha Genome Database

JcCB0190191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0190191.10 + phase: 2 /partial
         (83 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g150300.1 Alpha amylase, catalytic region; Pullulanas...   179   3e-46
IMGA|Medtr4g160980.1 Alpha amylase, catalytic region; ; chr04_ps...   112   4e-26

>IMGA|Medtr3g150300.1 Alpha amylase, catalytic region; Pullulanase,
           type I; ; ; chr03_pseudomolecule_IMGAG_V3
           39571747-39562313 E EGN_Mt090430 20090702
          Length = 672

 Score =  179 bits (454), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 75/83 (90%), Positives = 80/83 (96%)

Query: 1   CNHPVVMELILDSLRHWVAEYHVDGFRFDLASILCRGTDGSPLDSPPVIRAIAKDPILSR 60
           CNHPVVM+LILDSLRHWV EYHVDGFRFDLASILCRGTDGSPL++PP+IRAIAKD +LSR
Sbjct: 430 CNHPVVMDLILDSLRHWVTEYHVDGFRFDLASILCRGTDGSPLNAPPLIRAIAKDAVLSR 489

Query: 61  CKIIAEPWDCGGLYLVGKFPNWD 83
           CKIIAEPWDCGGLYLVG FPNWD
Sbjct: 490 CKIIAEPWDCGGLYLVGSFPNWD 512


>IMGA|Medtr4g160980.1 Alpha amylase, catalytic region; ;
           chr04_pseudomolecule_IMGAG_V3 40981878-40992441 E
           EGN_Mt090430 20090702
          Length = 788

 Score =  112 bits (281), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/101 (53%), Positives = 63/101 (62%), Gaps = 19/101 (18%)

Query: 1   CNHPVVMELILDSLRHWVAEYHVDGFRFDLASILCRG-------------------TDGS 41
           CNHPVV + I+D LR+WV E HVDGFRFDLASI+ R                    T G+
Sbjct: 387 CNHPVVRKFIVDCLRYWVTEMHVDGFRFDLASIMTRSSSLWNGVNVFGAPIEGDFLTTGT 446

Query: 42  PLDSPPVIRAIAKDPILSRCKIIAEPWDCGGLYLVGKFPNW 82
           PL SPP+I  I+ DPIL   K+IAE WD GGLY VG FP+W
Sbjct: 447 PLSSPPLIDMISIDPILRGVKLIAEAWDAGGLYQVGTFPHW 487