Jatropha Genome Database

JcCB0189561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0189561.10 + phase: 0 /partial
         (128 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g164000.1 NmrA-like chr03_pseudomolecule_IMGAG_V3 431...   229   2e-61

>IMGA|Medtr3g164000.1 NmrA-like chr03_pseudomolecule_IMGAG_V3
           43186960-43183508 E EGN_Mt090430 20090702
          Length = 391

 Score =  229 bits (585), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 110/116 (94%), Positives = 113/116 (97%)

Query: 1   GLIGQYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTFIALRNESINGKLLTFAGPRAWT 60
           GLIGQYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTFIALRNE INGKLLTFAGPRAWT
Sbjct: 224 GLIGQYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTFIALRNEKINGKLLTFAGPRAWT 283

Query: 61  TQEVITLCERLAGQDANVTTVPVSILRLTRQLTRIFEWTNDVADRLAFSEVITSHS 116
           TQEVITLCERLAGQDANVTTVPVS+LRLTRQLTR FEWTNDVADRLAFSEV+TS +
Sbjct: 284 TQEVITLCERLAGQDANVTTVPVSVLRLTRQLTRFFEWTNDVADRLAFSEVLTSDT 339