Jatropha Genome Database
- JcCB0188421.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0188421.10 + phase: 1 /TE/partial
(783 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 124 2e-28
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 122 5e-28
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 120 4e-27
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 118 1e-26
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 116 3e-26
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 115 9e-26
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 94 4e-19
IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl tra... 92 8e-19
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 91 2e-18
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 90 4e-18
IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H... 89 9e-18
IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy... 87 3e-17
IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA po... 87 3e-17
IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative chr... 82 1e-15
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 80 5e-15
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy... 70 3e-12
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 70 5e-12
IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl t... 65 1e-10
IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidy... 60 4e-09
IMGA|Medtr8g012170.1 polyprotein, putative chr08_pseudomolecule_... 58 1e-08
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 54 3e-07
IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H... 54 4e-07
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 85/136 (62%)
Query: 370 VAVAXNWELFQMDVQNAFLHGDLNEEVYMKMPPGFVSQTSRKVCRLQKSPYGLRKAPLCW 429
A W + Q+DV NAFLHGDL+EEVYM +PPG + VC+L KS YGL++A W
Sbjct: 432 AAAKKQWNIHQLDVNNAFLHGDLHEEVYMDIPPGLATPHKDLVCKLNKSLYGLKQASRQW 491
Query: 430 FAKLATSLKTYGFKQSYSGYSLFTFRNGHGQLNILVYVDDLIIFYKNSSAIQKFMDYLNC 489
+ KL +L T G++ S YSLF + G + + VYVDD+++ +++ I + +L+
Sbjct: 492 YEKLTEALHTRGYEHSPHDYSLFYKKRGASNVFLGVYVDDILLTGTDTNEIDELKRFLDN 551
Query: 490 SFHMKDFGKLKYFLGI 505
F +KD G+L YFLG+
Sbjct: 552 QFKIKDLGRLHYFLGL 567
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%)
Query: 369 AVAVAXNWELFQMDVQNAFLHGDLNEEVYMKMPPGFVSQTSRKVCRLQKSPYGLRKAPLC 428
A+A +W L Q+DV NAFLHGDL E VYM +PPG ++ S VC+L KS YGL++A
Sbjct: 962 ALASINHWHLHQLDVNNAFLHGDLQENVYMTLPPGISAKHSNTVCKLNKSLYGLKQASRK 1021
Query: 429 WFAKLATSLKTYGFKQSYSGYSLFTFRNGHGQLNILVYVDDLIIFYKNSSAIQKFMDYLN 488
W+ KL + L + + Q++S +SLFT + G +LVYVDD+I+ + Q L+
Sbjct: 1022 WYDKLTSILLKHQYTQAHSDHSLFTKKTGTSYTILLVYVDDIILAGDSLEEFQYIKSILD 1081
Query: 489 CSFHMKDFGKLKYFLGI 505
F +KD G+LK+FLG+
Sbjct: 1082 TLFKIKDLGQLKFFLGL 1098
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 15/116 (12%)
Query: 14 GKSIAFSSTFTYXVLDECILTTGYLINRILSMLLNGRTPYEILFGQVPSYRHIRTFGCLC 73
G+++ + S IL +LINR+ + +L+ ++PY +LF ++P I+ F
Sbjct: 661 GRALLYQSKLPPSFWSYAILHAVFLINRVPTHVLHNQSPYHVLFHKLPD---IQLF---- 713
Query: 74 YAYNLNKDKDKFASRSRKCTFIGYKYEKKGWKLYDLETREYFIFKDVVFVETEFPY 129
K K R+RK F+GYK KG+ L+DL TRE F+ + V+F E PY
Sbjct: 714 --------KSKLQPRARKSLFLGYKSGYKGYHLFDLSTREIFVSRHVIFHENILPY 761
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 80/131 (61%)
Query: 375 NWELFQMDVQNAFLHGDLNEEVYMKMPPGFVSQTSRKVCRLQKSPYGLRKAPLCWFAKLA 434
NW L Q+DV NAFLHGDL E+VYM +PPG S +VC+L KS YGL++A W+ KL
Sbjct: 994 NWHLHQLDVNNAFLHGDLQEDVYMMVPPGIKSSKLNQVCKLTKSLYGLKQASRKWYEKLT 1053
Query: 435 TSLKTYGFKQSYSGYSLFTFRNGHGQLNILVYVDDLIIFYKNSSAIQKFMDYLNCSFHMK 494
+ L + Q+ S YSLF + +LVYVDD+I+ + S L+ F +K
Sbjct: 1054 SVLFDQHYTQATSDYSLFVKKTSTSFTVLLVYVDDIILAGNSISEFSHIKSILDSLFKIK 1113
Query: 495 DFGKLKYFLGI 505
D G+LKYFLGI
Sbjct: 1114 DLGQLKYFLGI 1124
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 56/95 (58%)
Query: 37 YLINRILSMLLNGRTPYEILFGQVPSYRHIRTFGCLCYAYNLNKDKDKFASRSRKCTFIG 96
+LINR+ + LN ++PY +L ++P + FGCLCYA L K R+RK FIG
Sbjct: 690 FLINRVPTPTLNNQSPYFVLHHKLPDSSLFKVFGCLCYASTLQSHTTKLKHRARKSIFIG 749
Query: 97 YKYEKKGWKLYDLETREYFIFKDVVFVETEFPYAN 131
Y+ KG+ LYDL +RE FI + V F E PY +
Sbjct: 750 YQSGYKGFTLYDLHSREIFISRHVTFHENFLPYPH 784
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 85/138 (61%)
Query: 368 FAVAVAXNWELFQMDVQNAFLHGDLNEEVYMKMPPGFVSQTSRKVCRLQKSPYGLRKAPL 427
A+A NW L Q+DV NAFLHG+L E+VYM +PPG +VC+L+KS YGL++A
Sbjct: 833 IALASIHNWHLHQLDVNNAFLHGELQEDVYMILPPGINIAKPHQVCKLKKSLYGLKQASR 892
Query: 428 CWFAKLATSLKTYGFKQSYSGYSLFTFRNGHGQLNILVYVDDLIIFYKNSSAIQKFMDYL 487
W+ KL + L + Q+ S +SLF ++ +LVYVDD+I+ + Q L
Sbjct: 893 QWYEKLTSVLIQQHYIQASSDHSLFIKKSSDSFTILLVYVDDIILAGTSLLEFQNIKSIL 952
Query: 488 NCSFHMKDFGKLKYFLGI 505
+ SF +KD G+LKYFLGI
Sbjct: 953 DTSFKIKDLGQLKYFLGI 970
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 62/99 (62%)
Query: 31 CILTTGYLINRILSMLLNGRTPYEILFGQVPSYRHIRTFGCLCYAYNLNKDKDKFASRSR 90
+L +LINR+ + LL+ ++PY +L ++PS + FGCLCYA L + K SR+R
Sbjct: 524 AVLHAVFLINRVSTPLLHNQSPYLVLHNKLPSLDLFKVFGCLCYASTLQNHRTKLQSRAR 583
Query: 91 KCTFIGYKYEKKGWKLYDLETREYFIFKDVVFVETEFPY 129
K F+GY+ KG+ L+DL +RE FI + V F ET PY
Sbjct: 584 KSIFLGYQSGYKGYVLFDLTSREIFISRHVSFHETILPY 622
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 85/140 (60%), Gaps = 2/140 (1%)
Query: 367 FFAVAVAXNWELFQMDVQNAFLHGDLNEEVYMKMPPGFVSQTSRKVCRLQKSPYGLRKAP 426
A+A +W L Q DV NAFLHG+L E+VYM +PPG +VC+L KS YGL++A
Sbjct: 78 IIALASINHWHLHQFDVNNAFLHGELQEDVYMIIPPGVPHSHQDEVCKLNKSLYGLQQAS 137
Query: 427 LCWFAKLATSLKTYGFKQSYSGYSLFTFRNGHGQLNI-LVYVDDLIIFYKNSSAIQKFMD 485
+ W+ KL L + G+KQ+ S SLF ++ H I LVYVDD+I+ S
Sbjct: 138 MKWYEKLTNILISTGYKQAASDASLF-IKHTHSSFTILLVYVDDVILAGDTLSEFNTIKG 196
Query: 486 YLNCSFHMKDFGKLKYFLGI 505
L+ +F +KD G+LKYFLG+
Sbjct: 197 VLHDAFKIKDIGQLKYFLGL 216
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 84/137 (61%)
Query: 369 AVAVAXNWELFQMDVQNAFLHGDLNEEVYMKMPPGFVSQTSRKVCRLQKSPYGLRKAPLC 428
A+A NW + Q+DV NAFLHGDL E+VYM +P G S +VC+L KS YGL++A
Sbjct: 979 ALAYMNNWHIHQLDVNNAFLHGDLQEDVYMIVPQGITPSKSNQVCKLIKSLYGLKQASRK 1038
Query: 429 WFAKLATSLKTYGFKQSYSGYSLFTFRNGHGQLNILVYVDDLIIFYKNSSAIQKFMDYLN 488
W+ KL + L + + QS S +SLF + +LVYVDD+II + S Q L+
Sbjct: 1039 WYEKLTSLLVHHHYLQSTSDHSLFIKKTYTSFTALLVYVDDVIITGTSLSEFQDIKAILH 1098
Query: 489 CSFHMKDFGKLKYFLGI 505
+ +KD G+LKYFLG+
Sbjct: 1099 SALEIKDLGQLKYFLGL 1115
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 65/119 (54%)
Query: 14 GKSIAFSSTFTYXVLDECILTTGYLINRILSMLLNGRTPYEILFGQVPSYRHIRTFGCLC 73
G+++ F S +L ++INR+ S L+ ++PY++L G +P + + FG LC
Sbjct: 650 GRALLFQSKLPSSYWSYALLHAIFIINRVTSPTLHNKSPYQLLHGTIPDVQTFKVFGSLC 709
Query: 74 YAYNLNKDKDKFASRSRKCTFIGYKYEKKGWKLYDLETREYFIFKDVVFVETEFPYAND 132
Y+ L + K ++R+RK F+GY KG+ L D+ TRE I + V F E PY +
Sbjct: 710 YSTTLQSHRTKLSARARKTVFLGYAVGYKGYVLLDIHTREIHISRHVQFHEHILPYPTN 768
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 68/119 (57%)
Query: 14 GKSIAFSSTFTYXVLDECILTTGYLINRILSMLLNGRTPYEILFGQVPSYRHIRTFGCLC 73
G+++ + S L +LINR+ +++L ++PY++L+ P + FGCLC
Sbjct: 678 GRALLYQSKLPLSFWSYAFLHAVFLINRVPTLVLQNQSPYQLLYDSSPDVTTFKVFGCLC 737
Query: 74 YAYNLNKDKDKFASRSRKCTFIGYKYEKKGWKLYDLETREYFIFKDVVFVETEFPYAND 132
YA +L + K +R+RK F+GYK KG LYDL TRE FI + VVF E PY ++
Sbjct: 738 YASSLQSHRTKLETRARKSVFLGYKSGFKGSVLYDLHTREIFISRHVVFHECVLPYKSN 796
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 368 FAVAVAXNWELFQMDVQNAFLHGDLNEEVYMKMPPGFVSQTSRKVC 413
A+A NW L Q+DV NAFLHGDL E+VYM +PPG VS C
Sbjct: 1006 LALASLNNWHLHQLDVNNAFLHGDLQEDVYMDIPPG-VSTNKPNQC 1050
>IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 10143838-10146452 H
EGN_Mt090430 20090702
Length = 753
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 60/93 (64%)
Query: 37 YLINRILSMLLNGRTPYEILFGQVPSYRHIRTFGCLCYAYNLNKDKDKFASRSRKCTFIG 96
+LINR+ +++L ++PY++L+ +P + FGCLCYA L + K SR+RK F+G
Sbjct: 599 FLINRVPTLVLENKSPYQVLYKTLPDINSFKVFGCLCYASTLQSHRTKLQSRARKSVFLG 658
Query: 97 YKYEKKGWKLYDLETREYFIFKDVVFVETEFPY 129
YK KG LYDL T+E F+ ++V F E+ PY
Sbjct: 659 YKSGYKGSFLYDLNTKEIFMSRNVTFHESILPY 691
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 65/116 (56%)
Query: 14 GKSIAFSSTFTYXVLDECILTTGYLINRILSMLLNGRTPYEILFGQVPSYRHIRTFGCLC 73
G+++ + S L +LINRI + +L+ +PY +L+ P + FGCLC
Sbjct: 59 GRALLYQSKLPLSFWSYAFLHAVFLINRIPTPVLHNFSPYHLLYDSPPDITTFKVFGCLC 118
Query: 74 YAYNLNKDKDKFASRSRKCTFIGYKYEKKGWKLYDLETREYFIFKDVVFVETEFPY 129
YA +L + K +R+RK F+GYK KG+ LYDL TRE FI + VVF E PY
Sbjct: 119 YASSLQSHRTKLETRARKSVFLGYKLGFKGYVLYDLHTREIFISRHVVFHECVLPY 174
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 422 LRKAPLCWFAKLATSLKTYGFKQSYSGYSLFTFRNGHGQLNILVYVDDLIIFYKNSSAIQ 481
+R A W+ KLA+ L +G+KQ+ + +SLF + +LVYVDD+I+ +
Sbjct: 382 IRLASRKWYEKLASLLVNHGYKQASADHSLFIKHSTTQFTALLVYVDDIILAGNSLDEFT 441
Query: 482 KFMDYLNCSFHMKDFGKLKYFLGI 505
+ L+ SF +KD G+LKYFLG+
Sbjct: 442 FIKNILHNSFKIKDLGQLKYFLGL 465
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 64/116 (55%)
Query: 14 GKSIAFSSTFTYXVLDECILTTGYLINRILSMLLNGRTPYEILFGQVPSYRHIRTFGCLC 73
G+++ + S L +LINRI + +L+ +PY +L+ P + FGCLC
Sbjct: 152 GRALLYQSKLPLSFWSYAFLHAVFLINRITTPVLHNFSPYHLLYDSPPDITTFKVFGCLC 211
Query: 74 YAYNLNKDKDKFASRSRKCTFIGYKYEKKGWKLYDLETREYFIFKDVVFVETEFPY 129
YA +L K +R+RK F+GYK KG+ LYDL TRE FI + VVF E PY
Sbjct: 212 YASSLQSHITKLETRARKSVFLGYKLGFKGYVLYDLHTREIFISRHVVFHECVLPY 267
>IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 31006465-31009370 H
EGN_Mt090430 20090702
Length = 883
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 61/102 (59%)
Query: 32 ILTTGYLINRILSMLLNGRTPYEILFGQVPSYRHIRTFGCLCYAYNLNKDKDKFASRSRK 91
+L Y+INRI + LL ++PY + +G P + + FGCL YA L+ + KF SR++K
Sbjct: 649 VLHAIYIINRIPTPLLQNKSPYFLRYGHDPDLNNFKVFGCLSYASTLHNHRTKFDSRAQK 708
Query: 92 CTFIGYKYEKKGWKLYDLETREYFIFKDVVFVETEFPYANDK 133
C F+GYK KG LYDL + F ++V + E PY+N K
Sbjct: 709 CVFLGYKQGIKGAILYDLNHKTIFASRNVTYHEHILPYSNSK 750
>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
EGN_Mt090430 20090702
Length = 920
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 60/100 (60%)
Query: 32 ILTTGYLINRILSMLLNGRTPYEILFGQVPSYRHIRTFGCLCYAYNLNKDKDKFASRSRK 91
+L Y+INRI + LL ++PY + +G P + + FGCL YA L+ + KF SR++K
Sbjct: 719 VLHAIYIINRIPTPLLQNKSPYFLRYGHDPDLNNFKVFGCLSYASTLHNHRTKFDSRAQK 778
Query: 92 CTFIGYKYEKKGWKLYDLETREYFIFKDVVFVETEFPYAN 131
C F+GYK KG LYDL + F ++V + E PY+N
Sbjct: 779 CVFLGYKQGIKGAILYDLNHKTIFASRNVTYHEHILPYSN 818
>IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33354025-33354392 H EGN_Mt090430 20090702
Length = 108
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 63/94 (67%)
Query: 412 VCRLQKSPYGLRKAPLCWFAKLATSLKTYGFKQSYSGYSLFTFRNGHGQLNILVYVDDLI 471
V L+KS YGL++A W++KL+ +L YGF++S++ +SLFT+ + +L+YVDDL+
Sbjct: 2 VYWLRKSLYGLKQASRNWYSKLSQALIEYGFQESHADHSLFTYSRESIFMAVLIYVDDLV 61
Query: 472 IFYKNSSAIQKFMDYLNCSFHMKDFGKLKYFLGI 505
I ++ I F YL FHMKD G LKYFLG+
Sbjct: 62 IAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGL 95
>IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 2876704-2878630 E
EGN_Mt090430 20090702
Length = 64
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 44/57 (77%)
Query: 381 MDVQNAFLHGDLNEEVYMKMPPGFVSQTSRKVCRLQKSPYGLRKAPLCWFAKLATSL 437
MDV NAFLHGDL E+VYMK+P GF + +SR VC+L+KS Y L+ AP CWFAK +L
Sbjct: 1 MDVHNAFLHGDLQEDVYMKLPRGFHTSSSRLVCKLRKSQYVLKHAPQCWFAKRLVAL 57
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 64/117 (54%)
Query: 14 GKSIAFSSTFTYXVLDECILTTGYLINRILSMLLNGRTPYEILFGQVPSYRHIRTFGCLC 73
G+++ + S +L ++INR+ S L+ ++PY++L +P+ + FG LC
Sbjct: 658 GRALLYQSKLPVSYWSYALLHATFIINRVTSPTLHNKSPYQLLHDTIPAEHIFKVFGSLC 717
Query: 74 YAYNLNKDKDKFASRSRKCTFIGYKYEKKGWKLYDLETREYFIFKDVVFVETEFPYA 130
Y+ L+ + K ++R+RK F+GY KG+ L D+ TRE I + V F E PY
Sbjct: 718 YSTTLHSHRTKLSARARKSVFLGYTVGFKGYVLLDIHTREIHISRHVQFYEHILPYP 774
>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
EGN_Mt090430 20090702
Length = 790
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 32 ILTTGYLINRILSMLLNGRTPYEILFGQVPSYRHIRTFGCLCYAYNLNKDKDKFASRSRK 91
+L YLINRI + +LN ++ YE+L+ +VP ++ FGCL YA L ++ KF ++RK
Sbjct: 721 VLHAVYLINRIPTKILNNKSSYEVLYNEVPDLSSLKVFGCLSYASTLPVNRYKFDPKARK 780
Query: 92 CTFIGYKYE 100
C F+G+K E
Sbjct: 781 CAFLGFKSE 789
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Query: 345 KLKVLTIMRGLHLQQRWLLYTPFFAVA-VAXNWELFQMDVQNAFLHGDLNEEVYMKMPPG 403
+L + + L W+ P ++ + W D N FLHGDL E+VYM P G
Sbjct: 166 QLAMSPELSALEATGTWIFVDPPPNISPIGSKWIFRLNDANNTFLHGDLQEDVYMHPPQG 225
Query: 404 FVSQTSRKVCRLQKSPYGLRKAPLCWFAKLATSLKTYGFKQSYSGYSLFTFRNGHGQLNI 463
+VC+L KS YGL++A WF KL + L T GF Q+ + +S + +
Sbjct: 226 VSPPRPGQVCKLLKSLYGLKQASRRWFEKLISLLLTIGFVQASADHSFLIRASPTSFTAL 285
Query: 464 LVYV 467
L+YV
Sbjct: 286 LIYV 289
>IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235005.1 3152-790 H
EGN_Mt090430 20090702
Length = 772
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%)
Query: 14 GKSIAFSSTFTYXVLDECILTTGYLINRILSMLLNGRTPYEILFGQVPSYRHIRTFGCLC 73
G+++ + S L +LINR+ +++L ++PY++L+ P + FGCLC
Sbjct: 678 GRALLYQSKLPLSFWSYAFLHAVFLINRVPTLVLQNQSPYQLLYDSSPDVTTFKVFGCLC 737
Query: 74 YAYNLNKDKDKFASRSRKCTFIGYK 98
YA +L + K +R+RK F+GYK
Sbjct: 738 YASSLQSHRTKLETRARKSVFLGYK 762
>IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 39272474-39269703 H
EGN_Mt090430 20090702
Length = 847
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 15/119 (12%)
Query: 14 GKSIAFSSTFTYXVLDECILTTGYLINRILSMLLNGRTPYEILFGQVPSYRHIRTFGCLC 73
G+++ + S +L +LINR + LL G++PY L + P I TF
Sbjct: 634 GRALLYQSKLPASYWSYALLHAVFLINRKPTPLLEGQSPYYALHHKFPD---IDTF---- 686
Query: 74 YAYNLNKDKDKFASRSRKCTFIGYKYEKKGWKLYDLETREYFIFKDVVFVETEFPYAND 132
K++ ++R+RK F+GYK KG+ L D+ +RE F+ + VVF E PY ++
Sbjct: 687 --------KNQASTRARKTVFLGYKSGYKGFILLDIHSREIFVSRHVVFHEYFLPYPSN 737
>IMGA|Medtr8g012170.1 polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 1857213-1857446 H
EGN_Mt090430 20090702
Length = 77
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 398 MKMPPGFV-SQTSRKVCRLQKSPYGLRKAPLCWFAKLATSLKTYGFKQSYSGYSLFTFRN 456
M P GFV Q +VC+L+KS YGL++AP WF L L Y F+ + S SLF +
Sbjct: 1 MSQPYGFVHPQHPNQVCKLRKSLYGLKQAPQAWFQALQKFLLGYNFQNAKSDTSLFIYVK 60
Query: 457 GHGQLNILVYVDDL 470
+ LVYVDD+
Sbjct: 61 ANTFAYFLVYVDDI 74
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 461 LNILVYVDDLIIFYKNSSAIQKFMDYLNCSFHMKDFGKLKYFLGI 505
+ +L+YVDDL+I ++ I F YL FHMKD G LKYFLG+
Sbjct: 1 MAVLIYVDDLVIAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGL 45
>IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 10761249-10763836 E
EGN_Mt090430 20090702
Length = 772
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 31 CILTTGYLINRILSMLLNGRTPYEILFGQVPSYRHIRTFGCLCYAYNLNKDKDKFASRSR 90
++ +LIN++ + L ++PY++L+ +P + FGCLC+A L + K SR+R
Sbjct: 706 AVIHAVFLINKVPTPLFKQKSPYQLLYDSLPDINSFKVFGCLCFASTLLAQRSKLQSRAR 765
Query: 91 KCTF 94
K F
Sbjct: 766 KSIF 769