Jatropha Genome Database

JcCB0188331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0188331.10 + phase: 2 /pseudo/partial
         (139 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g096580.1 RhoGAP; Pleckstrin homology-type chr05_pseu...   158   8e-40
IMGA|Medtr3g149080.1 RhoGAP; Pleckstrin homology-type chr03_pseu...   154   1e-38
IMGA|Medtr5g075000.1 RhoGAP; Pleckstrin homology-type chr05_pseu...   146   4e-36

>IMGA|Medtr5g096580.1 RhoGAP; Pleckstrin homology-type
           chr05_pseudomolecule_IMGAG_V3 38375642-38385231 E
           EGN_Mt090430 20090702
          Length = 859

 Score =  158 bits (400), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 72/100 (72%), Positives = 84/100 (84%), Gaps = 1/100 (1%)

Query: 21  GVKVEGILRQAAAVDDVKHRIREYEQGKTEFAADEDAHVIGDCVKYFLRELPSSPVPASC 80
           G KVEGILRQ+A V++V  R++EYEQGK EF A+EDAHV+GDCVK+ LRELPSSPVPASC
Sbjct: 182 GTKVEGILRQSADVEEVDRRVQEYEQGKVEFDAEEDAHVVGDCVKHVLRELPSSPVPASC 241

Query: 81  CNALLQSFRTDRAN-RVNNMRVAILENFPEPNRRLLQRYL 119
           C ALL+++R DR   R+N MR AILE FPEPNRRLLQR L
Sbjct: 242 CTALLEAYRIDRKEARINAMRCAILETFPEPNRRLLQRIL 281


>IMGA|Medtr3g149080.1 RhoGAP; Pleckstrin homology-type
           chr03_pseudomolecule_IMGAG_V3 38918438-38926130 H
           EGN_Mt090430 20090702
          Length = 743

 Score =  154 bits (390), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/100 (71%), Positives = 84/100 (84%)

Query: 21  GVKVEGILRQAAAVDDVKHRIREYEQGKTEFAADEDAHVIGDCVKYFLRELPSSPVPASC 80
           G +VEGILRQAA VDDV+ R+REYEQGK +FA +EDAHVIGDC+K+ LR L SSPVPASC
Sbjct: 214 GARVEGILRQAADVDDVERRVREYEQGKVDFAPNEDAHVIGDCIKHVLRGLLSSPVPASC 273

Query: 81  CNALLQSFRTDRANRVNNMRVAILENFPEPNRRLLQRYLM 120
           C ALL++ RTDR+ RV +MR AI + FPEPNRRLLQR L+
Sbjct: 274 CKALLEACRTDRSVRVASMRAAINDTFPEPNRRLLQRILL 313


>IMGA|Medtr5g075000.1 RhoGAP; Pleckstrin homology-type
           chr05_pseudomolecule_IMGAG_V3 27198048-27211234 H
           EGN_Mt090430 20090702
          Length = 947

 Score =  146 bits (368), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 70/110 (63%), Positives = 83/110 (75%)

Query: 21  GVKVEGILRQAAAVDDVKHRIREYEQGKTEFAADEDAHVIGDCVKYFLRELPSSPVPASC 80
           G KVEGILRQAA V+DV++R+REYEQGK EF+  EDAHV+ DCVK+ LREL S P+P SC
Sbjct: 232 GAKVEGILRQAADVEDVENRVREYEQGKVEFSEGEDAHVVADCVKHVLRELRSFPIPVSC 291

Query: 81  CNALLQSFRTDRANRVNNMRVAILENFPEPNRRLLQRYLMSPLSVIGYVD 130
           C ALL + RT R NRV+ MR AI + FPEPNRRLLQR L+   +V    D
Sbjct: 292 CKALLAACRTARENRVSAMRTAICDTFPEPNRRLLQRILLMMQAVASRKD 341