Jatropha Genome Database

JcCB0187931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0187931.10 - phase: 1 /partial
         (229 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g156310.1 Transcription factor E2F/dimerisation partn...   180   6e-46
IMGA|AC146557_13.1 Winged helix repressor DNA-binding AC146557.3...   175   2e-44

>IMGA|Medtr3g156310.1 Transcription factor E2F/dimerisation partner
           (TDP) chr03_pseudomolecule_IMGAG_V3 40970794-40965713 E
           EGN_Mt090430 20090702
          Length = 390

 Score =  180 bits (456), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 95/179 (53%), Positives = 128/179 (71%), Gaps = 3/179 (1%)

Query: 26  RGCDGGGSKELDAHVNRLKAEVESLHAEEHRLDESIRQKQELLRSLEEDENNQRYLFMTE 85
           +GCDG   +EL+  VN LK EV+SL+AEE +LD+ I +++EL+R+LEE EN  +YLF T+
Sbjct: 166 KGCDGLEPRELEHQVNTLKDEVDSLYAEEFKLDQCISERKELIRNLEEGENTGKYLFFTK 225

Query: 86  EDITSLPCFQNQTLIAIKAPQASYLEVPDPDEDIGC--PQYKMIVRSNTGPIDLYLLSKY 143
           EDI +LPCFQN+ LI IKAP+AS++EVPDPDE++G    QY+MIVRS TGPI+LYLL+K+
Sbjct: 226 EDILTLPCFQNKQLITIKAPKASFIEVPDPDEELGFHQRQYRMIVRSATGPINLYLLNKH 285

Query: 144 NQQHEDVAVKQVNPLTSTSPKCCPHRMETEGLSFEQHYQNNNAEMFNSLYSESSGIQKI 202
           + + E V+ KQ   L   S      RM+  GL   Q +Q N +   NSL SE+ GIQ+I
Sbjct: 286 DHKFEGVSAKQAK-LEDPSRNSNGCRMDGVGLLENQGFQKNPSGSLNSLDSEAFGIQQI 343


>IMGA|AC146557_13.1 Winged helix repressor DNA-binding AC146557.33
           75654-81329 F EGN_Mt090430 20090702
          Length = 460

 Score =  175 bits (444), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/216 (44%), Positives = 133/216 (61%), Gaps = 17/216 (7%)

Query: 26  RGCDGGGSKELDAHVNRLKAEVESLHAEEHRLDESIRQKQELLRSLEEDENNQRYLFMTE 85
           +G D     E D     L+AE+E+L  EE RLDE IR+ QE LR+L EDENN+++LF+TE
Sbjct: 202 KGLDVSKPGEADDSFASLQAEIENLTIEERRLDEQIREMQERLRNLSEDENNEKFLFVTE 261

Query: 86  EDITSLPCFQNQTLIAIKAPQASYLEVPDPDEDIGCPQ--YKMIVRSNTGPIDLYLLSKY 143
           EDI +LPCFQN+TLIAIKAP  + LEVPDPDE +  PQ  Y++++RS  GPID+YL+S++
Sbjct: 262 EDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQF 321

Query: 144 NQQHE-----DVAVK-----QVNPLTSTSPKCCPHRMETEGLSFEQHYQNNNAEM--FNS 191
            ++ E     DVA K     +VN +        P   E +G   E   Q+        N+
Sbjct: 322 EEKFEEINGVDVASKFPPSPEVNKVNKDQSTVVP---EDKGKEIEVQRQDGEGPSSDLNN 378

Query: 192 LYSESSGIQKIIPSDCDIDDDYWFRSNPEVSTSELW 227
            +   SGI KI+PSD   D DYW  S+ +VS +++W
Sbjct: 379 NHDFVSGIMKIVPSDVASDADYWLLSDADVSITDMW 414