Jatropha Genome Database

JcCB0187481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0187481.10 + phase: 0 /partial
         (147 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g141050.1 Probable ATP synthase 24 kDa subunit, mitoc...   180   2e-46

>IMGA|Medtr4g141050.1 Probable ATP synthase 24 kDa subunit,
           mitochondrial precursor, putative
           chr04_pseudomolecule_IMGAG_V3 34727798-34731758 E
           EGN_Mt090430 20090702
          Length = 244

 Score =  180 bits (457), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 91/141 (64%), Positives = 112/141 (79%), Gaps = 5/141 (3%)

Query: 1   MAFPSRLLSRSKQLYGSQVILQQDHAIPVRYFAKKADPPSQKGDSPPRLKGDELLKGIFL 60
           MA  SRL S+SK LYGSQ++LQ++ A+PVR+FAK       +G   P LKGDE+LK I+L
Sbjct: 1   MALASRLASKSKLLYGSQILLQREFAVPVRHFAK-----GSEGSDLPALKGDEMLKKIYL 55

Query: 61  EVKKKYETAVGILKKEKITIAPEDPSAVSQYAKIMKTIREKAGLFSESERIKFTIETQTV 120
           EVK K+ET++GIL+KEKITIAPEDP+AVSQYAK+MKTIREKA L S ++ +K  I+ +T 
Sbjct: 56  EVKNKFETSIGILRKEKITIAPEDPAAVSQYAKVMKTIREKANLLSVAQDVKADIDIETQ 115

Query: 121 DIPDARTYLLTLKEIRIKYVL 141
           DIPDARTYLLTLKEIR K  L
Sbjct: 116 DIPDARTYLLTLKEIRTKRGL 136