Jatropha Genome Database

JcCB0186651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0186651.10 - phase: 0 
         (353 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC233675_3.1 TCP transcription factor AC233675.1 11574-1264...    82   6e-16
IMGA|Medtr4g109380.1 TCP transcription factor chr04_pseudomolecu...    82   6e-16
IMGA|Medtr2g132520.1 TCP transcription factor chr02_pseudomolecu...    78   5e-15
IMGA|Medtr3g036490.1 TCP transcription factor chr03_pseudomolecu...    68   7e-12

>IMGA|AC233675_3.1 TCP transcription factor AC233675.1 11574-12645 E
           EGN_Mt090430 20090702
          Length = 335

 Score = 81.6 bits (200), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 49/60 (81%)

Query: 111 KKDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRAIKRVA 170
           KKDRHSK++TS+G RDRRVRLS   A +F+D+QD LG+D+ SK ++WL+ K+K +I ++A
Sbjct: 22  KKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLA 81


>IMGA|Medtr4g109380.1 TCP transcription factor
           chr04_pseudomolecule_IMGAG_V3 24475212-24474141 E
           EGN_Mt090430 20090702
          Length = 335

 Score = 81.6 bits (200), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 49/60 (81%)

Query: 111 KKDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRAIKRVA 170
           KKDRHSK++TS+G RDRRVRLS   A +F+D+QD LG+D+ SK ++WL+ K+K +I ++A
Sbjct: 22  KKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLA 81


>IMGA|Medtr2g132520.1 TCP transcription factor
           chr02_pseudomolecule_IMGAG_V3 32076074-32073489 E
           EGN_Mt090430 20090702
          Length = 329

 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 48/59 (81%)

Query: 111 KKDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRAIKRV 169
           +KDRHSK++T++G RDRRVRLS   A +F+D+QD LG+D+ SK ++WL+ K+K AI ++
Sbjct: 24  RKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKL 82


>IMGA|Medtr3g036490.1 TCP transcription factor
           chr03_pseudomolecule_IMGAG_V3 9665599-9664445 H
           EGN_Mt090430 20090702
          Length = 384

 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 42/59 (71%)

Query: 112 KDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRAIKRVA 170
           KDRHSK+ T +GLRDRR+RLS+  A + +DLQD LG  + SK ++WLL  +K  I ++ 
Sbjct: 57  KDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLGQPSKVIDWLLEATKLDIDKLP 115