Jatropha Genome Database

JcCB0186021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0186021.10 + phase: 0 
         (82 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g084190.1 Ribosomal protein S21e chr07_pseudomolecule...   142   6e-35
IMGA|Medtr4g021770.1 Ribosomal protein S21e chr04_pseudomolecule...    71   2e-13
IMGA|Medtr4g021960.1 Ribosomal protein S21e chr04_pseudomolecule...    58   1e-09

>IMGA|Medtr7g084190.1 Ribosomal protein S21e
           chr07_pseudomolecule_IMGAG_V3 18143983-18145438 E
           EGN_Mt090430 20090702
          Length = 106

 Score =  142 bits (357), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 63/81 (77%), Positives = 72/81 (88%)

Query: 1   MQNDEGQNMDLYIPRKCSATNRLITSKDHASVQINIGHLDANGNYTGQFTTFALCGFVRA 60
           MQN+EGQ  +LYIPRKCSATNRLIT+KDHASVQIN+GHLD +G Y GQF+TFALCGF RA
Sbjct: 26  MQNEEGQITELYIPRKCSATNRLITAKDHASVQINVGHLDESGVYNGQFSTFALCGFTRA 85

Query: 61  QGDADSALDRLWLKKKVELRQ 81
           QGDADS +DRLW KKK E++Q
Sbjct: 86  QGDADSGIDRLWQKKKAEIKQ 106


>IMGA|Medtr4g021770.1 Ribosomal protein S21e
          chr04_pseudomolecule_IMGAG_V3 4249839-4248453 E
          EGN_Mt090430 20090702
          Length = 91

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 44/69 (63%), Gaps = 6/69 (8%)

Query: 14 PRKCS-ATNRLITSKDHASVQINIGHLDANGNYTGQFTTFALCGFVRAQGDADSALDRLW 72
          P  CS ATNRLIT+ +HAS QINI HLD +G YTG F+ FAL   +      DS LD LW
Sbjct: 27 PIGCSSATNRLITASEHASFQINICHLDESGVYTGHFSIFALWAML-----IDSGLDSLW 81

Query: 73 LKKKVELRQ 81
             K E++Q
Sbjct: 82 FYLKTEVKQ 90


>IMGA|Medtr4g021960.1 Ribosomal protein S21e
          chr04_pseudomolecule_IMGAG_V3 4319323-4318665 E
          EGN_Mt090430 20090702
          Length = 77

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 32/42 (76%), Gaps = 1/42 (2%)

Query: 14 PRKCS-ATNRLITSKDHASVQINIGHLDANGNYTGQFTTFAL 54
          P  CS ATNRLIT+ +HAS QINI HLD +G YTG F+ FAL
Sbjct: 27 PIGCSSATNRLITASEHASFQINICHLDESGVYTGHFSIFAL 68