Jatropha Genome Database

JcCB0185581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0185581.10 + phase: 0 /partial
         (265 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g078600.1 Dihydrouridine synthase, DuS chr08_pseudomo...    94   1e-19
IMGA|Medtr3g163110.1 Zinc finger, CCCH-type; Dihydrouridine synt...    73   2e-13
IMGA|Medtr3g029890.1 Dihydrouridine synthase, DuS chr03_pseudomo...    66   2e-11

>IMGA|Medtr8g078600.1 Dihydrouridine synthase, DuS
           chr08_pseudomolecule_IMGAG_V3 16084377-16088257 E
           EGN_Mt090430 20090702
          Length = 257

 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 89/176 (50%), Gaps = 16/176 (9%)

Query: 100 RPKLIVAPMVDNSELPFRMLCRKYGAEAAYTPML--HSRIFTE---NEKYRDQEFT---- 150
           R K I+APMV    LP R+L  +YGA+  Y   +  H  I  E   NE     +F     
Sbjct: 4   RNKKILAPMVRVGTLPLRLLAAEYGADITYGEEIVDHKIIKCERRINEHLGSTDFVEKGT 63

Query: 151 ------TCKEDRPLFV-QFCANDPEILLEAARRVEPYCDYVDINLGCPQRIARRGNYGAF 203
                 TC +++   V Q   ++    L AA+ V      VDIN+GCP+  +  G  GA 
Sbjct: 64  ESVVFRTCDQEKNRVVFQIGTSNAVRALTAAQLVCNDVAAVDINMGCPKAFSLSGGMGAA 123

Query: 204 LMDKLPLVKSLVEKLTLNLNVPVSCKIRVFPKLEDTINYARMLEEAGCSLLAVHGR 259
           L+ K  L+  ++  L  NL++PV+CKIR+     DT+  AR +E+ G   +AVHGR
Sbjct: 124 LLSKPELISDILTTLRRNLSLPVTCKIRLLKSPHDTVELARRIEKTGVDAIAVHGR 179


>IMGA|Medtr3g163110.1 Zinc finger, CCCH-type; Dihydrouridine
           synthase, DuS chr03_pseudomolecule_IMGAG_V3
           42816690-42821550 E EGN_Mt090430 20090702
          Length = 691

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 4/169 (2%)

Query: 100 RPKLIVAPMVDNSELPFRMLCRKYGAEAAYTPMLHSRIFTENEKYRDQEFTTCKEDRPLF 159
           R KL +AP+     LPFR +C+  GA+     M       E +            +    
Sbjct: 337 REKLYLAPLTTVGNLPFRRVCKVLGADITCGEMAMCTNLLEGQASEWALLRRHSSEDLFG 396

Query: 160 VQFCANDPEILLEAARRVEPYC--DYVDINLGCPQRIARRGNYGAFLMDKLPLVKSLVEK 217
           VQ C   P+ +  A   +E  C  D++DIN+GCP  I      G+ L+ K   ++++VE 
Sbjct: 397 VQICGAHPDTVGRAVELIEKECTVDFIDINMGCPIDIVVNKGAGSALLTKPMRMQNVVEV 456

Query: 218 LTLNLNVPVSCKIRV--FPKLEDTINYARMLEEAGCSLLAVHGRTRDEK 264
            +  +++PV+ K+R   F       +        G S + +HGR+R ++
Sbjct: 457 ASGTVDIPVTIKVRTAYFEGRNRIDSLIANFSSWGASAVTIHGRSRQQR 505


>IMGA|Medtr3g029890.1 Dihydrouridine synthase, DuS
           chr03_pseudomolecule_IMGAG_V3 7926738-7917209 E
           EGN_Mt090430 20090702
          Length = 375

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 3/144 (2%)

Query: 101 PKLIVAPMVDNSELPFRMLCRKYGAEA-AYTPMLHSRIFTENEKYRDQEFTTCKEDRPLF 159
           P   VAPM+D ++  +R L R     A  YT ML +      +   D+      +  P+ 
Sbjct: 9   PWFSVAPMMDWTDNHYRTLARLISKHAWLYTEMLAAETIVYQKGNLDRFLAYPPDQHPIV 68

Query: 160 VQFCANDPEILLEAARRVEPYC-DYVDINLGCPQ-RIARRGNYGAFLMDKLPLVKSLVEK 217
           +Q   ++ E L +A +  + Y  D ++ N GCP  R+A RG +GA LM +   V   V  
Sbjct: 69  LQIGGSNLENLAKATKLADAYGYDEINFNCGCPSPRVAGRGCFGARLMLEPKFVAEAVSV 128

Query: 218 LTLNLNVPVSCKIRVFPKLEDTIN 241
           +  N NVPVS K R+     D+ N
Sbjct: 129 IAANTNVPVSVKCRIGVDDHDSYN 152