Jatropha Genome Database

JcCB0183341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0183341.10 + phase: 0 /partial
         (50 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g136890.1 C2 chr03_pseudomolecule_IMGAG_V3 34640677-3...    61   2e-10
IMGA|Medtr3g137270.1 C2 chr03_pseudomolecule_IMGAG_V3 34777871-3...    49   6e-07
IMGA|Medtr3g136960.1 C2 chr03_pseudomolecule_IMGAG_V3 34651442-3...    49   6e-07

>IMGA|Medtr3g136890.1 C2 chr03_pseudomolecule_IMGAG_V3
          34640677-34643738 E EGN_Mt090430 20090702
          Length = 822

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/52 (51%), Positives = 36/52 (69%), Gaps = 2/52 (3%)

Query: 1  MPRLLHGTLSVTVFEIDIIQNGCGFNLFSKQNC--GKRFLSKMKRMVLCRPE 50
          MP+LLHGTL VT+ E+D +Q GC  +   K     GKRFL+++K  +LCRPE
Sbjct: 1  MPQLLHGTLKVTISEVDRLQAGCNLDFIRKGTTHKGKRFLAQVKGCILCRPE 52


>IMGA|Medtr3g137270.1 C2 chr03_pseudomolecule_IMGAG_V3
          34777871-34781303 E EGN_Mt090430 20090702
          Length = 826

 Score = 48.9 bits (115), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 5/53 (9%)

Query: 1  MPRLLHGTLSVTVFEIDIIQN--GCGFNLFSKQNC---GKRFLSKMKRMVLCR 48
          M  LLHG L VT++E+D +Q   GC F+L +K  C   GK+ LS++K   LC+
Sbjct: 1  MLHLLHGKLDVTIYEVDTLQTLAGCNFDLCNKGTCTSMGKKILSQVKSCFLCQ 53


>IMGA|Medtr3g136960.1 C2 chr03_pseudomolecule_IMGAG_V3
          34651442-34654874 E EGN_Mt090430 20090702
          Length = 826

 Score = 48.9 bits (115), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 5/53 (9%)

Query: 1  MPRLLHGTLSVTVFEIDIIQN--GCGFNLFSKQNC---GKRFLSKMKRMVLCR 48
          M  LLHG L VT++E+D +Q   GC F+L +K  C   GK+ LS++K   LC+
Sbjct: 1  MLHLLHGKLDVTIYEVDTLQTLAGCNFDLCNKGTCTSMGKKILSQVKSCFLCQ 53