Jatropha Genome Database

JcCB0181921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0181921.10 - phase: 0 /pseudo
         (110 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g137270.1 C2 chr04_pseudomolecule_IMGAG_V3 33787302-3...    81   1e-16
IMGA|Medtr3g157400.1 C2 chr03_pseudomolecule_IMGAG_V3 41495274-4...    65   8e-12
IMGA|Medtr5g011190.1 C2 chr05_pseudomolecule_IMGAG_V3 2986879-29...    47   2e-06

>IMGA|Medtr4g137270.1 C2 chr04_pseudomolecule_IMGAG_V3
          33787302-33783568 H EGN_Mt090430 20090702
          Length = 849

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/67 (64%), Positives = 52/67 (77%), Gaps = 3/67 (4%)

Query: 22 PSFLHGELDLWIIEAKSLPNMDLPAEHIRRCFTVFGSCSDPCGQKGVK-HSGKNSMITSD 80
          P FLHG+LDL+IIEAKSLPN+DL  E IR+C T+  SC+ P   KG+K HSGK+ +ITSD
Sbjct: 12 PVFLHGDLDLFIIEAKSLPNLDLSTEAIRKCLTMGNSCTPPF-VKGLKTHSGKDKIITSD 70

Query: 81 PYC-ICL 86
          PY  ICL
Sbjct: 71 PYVSICL 77


>IMGA|Medtr3g157400.1 C2 chr03_pseudomolecule_IMGAG_V3
          41495274-41504794 E EGN_Mt090430 20090702
          Length = 861

 Score = 65.1 bits (157), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 4/67 (5%)

Query: 24 FLHGELDLWIIEAKSLPNMDLPAEHIRRCFTVFGSCSDPCGQKGVKHSGK---NSMITSD 80
          +LHG LDL I+EA+ LPNMD+ +E  RR F+ F SCS     KG  H  +   + +ITSD
Sbjct: 12 YLHGNLDLKIVEARYLPNMDMLSERFRRFFSAFNSCSANITTKGKNHLTRHRHHKIITSD 71

Query: 81 PYC-ICL 86
          PY  +CL
Sbjct: 72 PYVTVCL 78


>IMGA|Medtr5g011190.1 C2 chr05_pseudomolecule_IMGAG_V3
          2986879-2982001 H EGN_Mt090430 20090702
          Length = 854

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 7/75 (9%)

Query: 9  QITPYTGATTSVEPSFLHGELDLWIIEAKSLPNMDLPAEHIRRCFTVFGSCSDPCGQKGV 68
          Q+ P+   +TS+    LHG L++ + EAK+LPNMD   + +   F+V         + G 
Sbjct: 22 QLVPFPTTSTSLRILLLHGNLEICVQEAKNLPNMDTFHKKVGEMFSVLPK------KLGG 75

Query: 69 KHSGKNSM-ITSDPY 82
          K  GK S  ITSDPY
Sbjct: 76 KIEGKMSRNITSDPY 90