Jatropha Genome Database

JcCB0181351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0181351.10 - phase: 2 /partial
         (160 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g017990.1 SWIB/MDM2 chr05_pseudomolecule_IMGAG_V3 655...   138   1e-33
IMGA|Medtr3g076380.1 SWIB/MDM2 chr03_pseudomolecule_IMGAG_V3 176...    95   2e-20
IMGA|Medtr5g025550.1 SWIB/MDM2 chr05_pseudomolecule_IMGAG_V3 102...    64   3e-11

>IMGA|Medtr5g017990.1 SWIB/MDM2 chr05_pseudomolecule_IMGAG_V3
           6557466-6553115 E EGN_Mt090430 20090702
          Length = 344

 Score =  138 bits (347), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 59/83 (71%), Positives = 73/83 (87%)

Query: 75  FTKLCSLSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVN 134
           F K+CSLSPQLQEF+G  E+ARTEVVK+LWAYIRE++LQDP N++NIICDE L ALF V+
Sbjct: 132 FCKICSLSPQLQEFVGAPEMARTEVVKQLWAYIREKDLQDPNNRRNIICDEPLRALFGVD 191

Query: 135 SINMFQMNKALSKHIWPLNEEGM 157
           +INMFQMNK L+KHIWPL+ + +
Sbjct: 192 TINMFQMNKVLAKHIWPLDSDDV 214



 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 50/75 (66%)

Query: 75  FTKLCSLSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVN 134
           F     LS  L +F+GESEL+R++V+KR+W YI+  NLQDP +K+ I+CDE L  LF V+
Sbjct: 265 FLAPLQLSDALAKFLGESELSRSDVIKRMWDYIKGNNLQDPSDKRQILCDEKLKELFDVD 324

Query: 135 SINMFQMNKALSKHI 149
           S   F + K L+ H 
Sbjct: 325 SFVGFTVTKLLAPHF 339


>IMGA|Medtr3g076380.1 SWIB/MDM2 chr03_pseudomolecule_IMGAG_V3
           17655680-17650528 E EGN_Mt090430 20090702
          Length = 344

 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 40/76 (52%), Positives = 57/76 (75%)

Query: 77  KLCSLSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVNSI 136
           KLC +SP+LQ  +G+  + RTE+VK+LWAYI++ NLQDP NK+ IIC++ L  +F  +  
Sbjct: 162 KLCGVSPELQVIVGQPAMPRTEIVKQLWAYIKKNNLQDPSNKRKIICNDELRVVFETDCT 221

Query: 137 NMFQMNKALSKHIWPL 152
           +MF+MNK L+KHI  L
Sbjct: 222 DMFKMNKLLAKHIIAL 237



 Score = 52.8 bits (125), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 81  LSPQLQEFIGES--ELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVNSINM 138
           +S  L  F G +  E+ +TEV++R+W YI+   L+DP N   I+CD  L  +F   SI+ 
Sbjct: 269 ISDSLANFFGVTGREMLQTEVLRRIWEYIKVNQLEDPVNPMAIMCDAKLQEIFGCESISA 328

Query: 139 FQMNKALSKH 148
             + + L +H
Sbjct: 329 LGIPEVLGRH 338


>IMGA|Medtr5g025550.1 SWIB/MDM2 chr05_pseudomolecule_IMGAG_V3
           10220899-10218990 F EGN_Mt090430 20090702
          Length = 134

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 1/73 (1%)

Query: 77  KLCSLSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVNSI 136
           K+  ++ +L  FIG  E++RTE VK++W YI+ +NLQ+P NK+ I CD+ L  +F     
Sbjct: 57  KVVQVTSELGNFIGAPEVSRTEAVKKVWEYIKLQNLQNPNNKKEIFCDDKLKTIFDGKDK 116

Query: 137 NMF-QMNKALSKH 148
            +F ++ K L+ H
Sbjct: 117 VVFTEIAKLLATH 129