Jatropha Genome Database
- JcCB0180631.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0180631.10 - phase: 1 /TE
(667 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 112 7e-25
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 111 9e-25
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 111 1e-24
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 109 5e-24
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 101 1e-21
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 89 8e-18
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 69 6e-12
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 63 6e-10
IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative chr... 52 8e-07
IMGA|Medtr6g069750.1 Reverse transcriptase, putative chr06_pseud... 51 1e-06
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 92/180 (51%), Gaps = 23/180 (12%)
Query: 426 EPESFEEAIENEHKRNWIEAMQDEMKSLHEDETFEXXXXXXXXXXXXXXWVFSIKQEEHS 485
EP S+EEA + W +AM E +LH++ T+ WV+ +K +
Sbjct: 335 EPNSYEEASMDP---AWQKAMTQEFLALHDNNTWTLTNLPKDKKSVGCRWVYKVKHKADG 391
Query: 486 SQPQFKARLVVK-------------------MTSIRTVLGMATSFELEIEQMDGKTTFLN 526
S ++KARLVVK MT++RT++ A + I Q+D FL+
Sbjct: 392 SVERYKARLVVKGYTQHHGIDYTETFSPVVKMTTVRTLIVAAAKKQWNIHQLDVNNAFLH 451
Query: 527 GDLEEEIYMELPEDFV-EKEDCVCKLKKSLYGLKQALRQWYKKFESVMGEQGYRKTTSDH 585
GDL EE+YM++P +D VCKL KSLYGLKQA RQWY+K + +GY + D+
Sbjct: 452 GDLHEEVYMDIPPGLATPHKDLVCKLNKSLYGLKQASRQWYEKLTEALHTRGYEHSPHDY 511
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 111 bits (278), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 117/246 (47%), Gaps = 59/246 (23%)
Query: 390 QPPALEGSQTLRRSSRVXQPST----------------RYPVNEYV-------------L 420
QPP + R+SSR+ QP T +YP++ Y+ L
Sbjct: 823 QPPVI------RKSSRITQPPTHLQDYVCSVSDDTSFVQYPISHYLSYNNLSSSHCAFAL 876
Query: 421 TTDG-GEPESFEEAIENEHKRNWIEAMQDEMKSLHEDETFEXXXXXXXXXXXXXXWVFSI 479
+ D EP ++ EA + + W +AMQ E+ +L T++ W++ I
Sbjct: 877 SLDSHTEPTTYAEASKFD---CWKQAMQVELSALENTGTWKLVDLPPNVKPIVCRWIYKI 933
Query: 480 KQEEHSSQPQFKARLVVK-------------------MTSIRTVLGMATSFELEIEQMDG 520
K S ++KARLV K +T++RT++ +A I Q+D
Sbjct: 934 KHHADGSIERYKARLVAKGYNQIEGLDYFDTYSPVAKLTTVRTIIALAYMNNWHIHQLDV 993
Query: 521 KTTFLNGDLEEEIYMELPEDFV-EKEDCVCKLKKSLYGLKQALRQWYKKFESVMGEQGYR 579
FL+GDL+E++YM +P+ K + VCKL KSLYGLKQA R+WY+K S++ Y
Sbjct: 994 NNAFLHGDLQEDVYMIVPQGITPSKSNQVCKLIKSLYGLKQASRKWYEKLTSLLVHHHYL 1053
Query: 580 KTTSDH 585
++TSDH
Sbjct: 1054 QSTSDH 1059
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 109/210 (51%), Gaps = 37/210 (17%)
Query: 410 STRYPVNEYV----LTTDGG----------EPESFEEAIENEHKRNWIEAMQDEMKSLHE 455
ST YP++ Y+ ++T+ EP ++ EA +++ W +AMQ E+ +L +
Sbjct: 708 STTYPLSHYINYNNISTNHASFISSLQTTPEPTTYVEASKHD---CWNKAMQAELLALEK 764
Query: 456 DETFEXXXXXXXXXXXXXXWVFSIKQEEHSSQPQFKARLVVK------------------ 497
T++ W++ +K S ++KARLV K
Sbjct: 765 TGTWDIVDLPAYVKPIGCRWIYKVKHNADGSIERYKARLVAKGYTQIEGLDYFETYSPVA 824
Query: 498 -MTSIRTVLGMATSFELEIEQMDGKTTFLNGDLEEEIYMELPEDF-VEKEDCVCKLKKSL 555
+T++R V+ +A+ + Q+D FL+G+L+E++YM LP + K VCKLKKSL
Sbjct: 825 KLTTVRLVIALASIHNWHLHQLDVNNAFLHGELQEDVYMILPPGINIAKPHQVCKLKKSL 884
Query: 556 YGLKQALRQWYKKFESVMGEQGYRKTTSDH 585
YGLKQA RQWY+K SV+ +Q Y + +SDH
Sbjct: 885 YGLKQASRQWYEKLTSVLIQQHYIQASSDH 914
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 105/210 (50%), Gaps = 37/210 (17%)
Query: 410 STRYPVNEY-------------VLTTDG-GEPESFEEAIENEHKRNWIEAMQDEMKSLHE 455
ST YP++ Y VL+ EP+++ EA N+H+ W +AMQ E+++L +
Sbjct: 836 STTYPISHYLSHNKLSSHHSSYVLSLHTHNEPKTYAEA--NKHE-CWQKAMQVELQALEQ 892
Query: 456 DETFEXXXXXXXXXXXXXXWVFSIKQEEHSSQPQFKARLVVK------------------ 497
T+ WVF IK+ S ++KARLV K
Sbjct: 893 TGTWNFVDLPPNVKPIGCRWVFKIKRHADGSIERYKARLVAKGYTQVEGLDYFDTFSPVA 952
Query: 498 -MTSIRTVLGMATSFELEIEQMDGKTTFLNGDLEEEIYMELPEDFVEKE-DCVCKLKKSL 555
+T++R ++ +A+ + Q+D FL+GDL+E +YM LP K + VCKL KSL
Sbjct: 953 KLTTVRLIIALASINHWHLHQLDVNNAFLHGDLQENVYMTLPPGISAKHSNTVCKLNKSL 1012
Query: 556 YGLKQALRQWYKKFESVMGEQGYRKTTSDH 585
YGLKQA R+WY K S++ + Y + SDH
Sbjct: 1013 YGLKQASRKWYDKLTSILLKHQYTQAHSDH 1042
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 96/180 (53%), Gaps = 23/180 (12%)
Query: 426 EPESFEEAIENEHKRNWIEAMQDEMKSLHEDETFEXXXXXXXXXXXXXXWVFSIKQEEHS 485
EP+S+ EA + + W AMQ E+++L + T++ W++ +K
Sbjct: 892 EPKSYAEASKLD---CWKHAMQVELQALEKTGTWKLVDLPPNVKPIGCRWIYKVKFHADG 948
Query: 486 SQPQFKARLVVK-------------------MTSIRTVLGMATSFELEIEQMDGKTTFLN 526
+ ++KARLV K +T++R V+ +++ + Q+D FL+
Sbjct: 949 TVERYKARLVAKGYNQIEGLDYLDTYSPVAKLTTVRLVIALSSINNWHLHQLDVNNAFLH 1008
Query: 527 GDLEEEIYMELPEDF-VEKEDCVCKLKKSLYGLKQALRQWYKKFESVMGEQGYRKTTSDH 585
GDL+E++YM +P K + VCKL KSLYGLKQA R+WY+K SV+ +Q Y + TSD+
Sbjct: 1009 GDLQEDVYMMVPPGIKSSKLNQVCKLTKSLYGLKQASRKWYEKLTSVLFDQHYTQATSDY 1068
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 20/159 (12%)
Query: 446 MQDEMKSLHEDETFEXXXXXXXXXXXXXXWVFSIKQEEHSSQPQFKARLVVK-------- 497
MQ E+ +L + T++ W+F IK S ++KARLV K
Sbjct: 1 MQSEITALEQTGTWKIVDLPPAVKPIGCRWIFKIKHNVDGSIERYKARLVAKGYNQIEGL 60
Query: 498 -----------MTSIRTVLGMATSFELEIEQMDGKTTFLNGDLEEEIYMELPEDFVEK-E 545
+T++R ++ +A+ + Q D FL+G+L+E++YM +P +
Sbjct: 61 DYFDTYSPVAKLTTVRFIIALASINHWHLHQFDVNNAFLHGELQEDVYMIIPPGVPHSHQ 120
Query: 546 DCVCKLKKSLYGLKQALRQWYKKFESVMGEQGYRKTTSD 584
D VCKL KSLYGL+QA +WY+K +++ GY++ SD
Sbjct: 121 DEVCKLNKSLYGLQQASMKWYEKLTNILISTGYKQAASD 159
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 519 DGKTTFLNGDLEEEIYMELPEDF-VEKEDCVCKLKKSLYGLKQALRQWYKKFESVMGEQG 577
D TFL+GDL+E++YM P+ + VCKL KSLYGLKQA R+W++K S++ G
Sbjct: 204 DANNTFLHGDLQEDVYMHPPQGVSPPRPGQVCKLLKSLYGLKQASRRWFEKLISLLLTIG 263
Query: 578 YRKTTSDH 585
+ + ++DH
Sbjct: 264 FVQASADH 271
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 22/143 (15%)
Query: 426 EPESFEEAIENEHKRNWIEAMQDEMKSLHEDETFEXXXXXXXXXXXXXXWVFSIKQEEHS 485
EP+S+ EA + E W +AMQ E+ +L T++ W++ +K
Sbjct: 911 EPKSYTEANKFE---CWRQAMQVELTALENTGTWKIIDLPSNAKPIGCRWIYKVKHHADG 967
Query: 486 SQPQFKARLVVK-------------------MTSIRTVLGMATSFELEIEQMDGKTTFLN 526
+ ++KARLV K T+IR VL +A+ + Q+D FL+
Sbjct: 968 TIERYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIRLVLALASLNNWHLHQLDVNNAFLH 1027
Query: 527 GDLEEEIYMELPEDFVEKEDCVC 549
GDL+E++YM++P + C
Sbjct: 1028 GDLQEDVYMDIPPGVSTNKPNQC 1050
>IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 2876704-2878630 E
EGN_Mt090430 20090702
Length = 64
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 518 MDGKTTFLNGDLEEEIYMELPEDF-VEKEDCVCKLKKSLYGLKQALRQWYKK 568
MD FL+GDL+E++YM+LP F VCKL+KS Y LK A + W+ K
Sbjct: 1 MDVHNAFLHGDLQEDVYMKLPRGFHTSSSRLVCKLRKSQYVLKHAPQCWFAK 52
>IMGA|Medtr6g069750.1 Reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12976555-12977103 H
EGN_Mt090430 20090702
Length = 149
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 35/46 (76%)
Query: 494 LVVKMTSIRTVLGMATSFELEIEQMDGKTTFLNGDLEEEIYMELPE 539
LV KMT++RTV+ +A+ + I ++D + FL+GDL+E++YM +P+
Sbjct: 96 LVAKMTTVRTVIALASINQWHIHKLDANSAFLHGDLQEDVYMLIPQ 141