Jatropha Genome Database

JcCB0176661.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0176661.20 + phase: 0 
         (193 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g096940.1 hypothetical protein chr07_pseudomolecule_I...   195   1e-50

>IMGA|Medtr7g096940.1 hypothetical protein
           chr07_pseudomolecule_IMGAG_V3 21823859-21824683 F
           EGN_Mt090430 20090702
          Length = 193

 Score =  195 bits (495), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 111/184 (60%), Positives = 125/184 (67%), Gaps = 8/184 (4%)

Query: 1   MACTIDFRCLDEGFGGKTYKRKRE-AQSLA-ATGDVDGSMEIDGETLPPAAKRSAVASIE 58
           MACTIDFR LDEGFGGKTYKRKRE AQ++  A  +   SME D +T PP AKRSA+ S+ 
Sbjct: 1   MACTIDFRHLDEGFGGKTYKRKREQAQAIEDAKMEEIVSMETD-DTAPPPAKRSALPSLS 59

Query: 59  NPDKPVF-----GQPTYDGVIGGKVSGRKWKQARKQRASAKLVSIKGTTFEERERQKEIK 113
           +P+KP F     G PTYDGVI GKVSGRKWKQ R +RASA  VS KGTTFEER R+K IK
Sbjct: 60  DPNKPTFSAVSFGAPTYDGVIAGKVSGRKWKQVRTRRASALQVSKKGTTFEERAREKRIK 119

Query: 114 RAYRERMNELKDXXXXXXXXXXXXXXXXXXXXXXXXLRSGTKLQKITNPKTLKKIAKSKD 173
            AY+E+M ELK+                        L+SGTK QKITNPKTLKKIAKSK 
Sbjct: 120 TAYKEKMTELKEAIRMNKVEKRKKREESEKRKKENVLKSGTKFQKITNPKTLKKIAKSKQ 179

Query: 174 RKLL 177
           RK L
Sbjct: 180 RKQL 183