Jatropha Genome Database

JcCB0176391.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0176391.10 - phase: 0 /partial
         (348 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g115390.1 Porphyromonas-type peptidyl-arginine deimin...   421   e-118
IMGA|Medtr8g115390.2 Porphyromonas-type peptidyl-arginine deimin...   241   5e-64
IMGA|Medtr8g115290.1 Porphyromonas-type peptidyl-arginine deimin...   102   4e-22

>IMGA|Medtr8g115390.1 Porphyromonas-type peptidyl-arginine deiminase
           chr08_pseudomolecule_IMGAG_V3 25901436-25898156 E
           EGN_Mt090430 20090702
          Length = 322

 Score =  421 bits (1081), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 192/264 (72%), Positives = 223/264 (84%), Gaps = 2/264 (0%)

Query: 1   ERPDNWRDNAVHAQHVFAKVATAISKFEPVTVCASASQWEKARSLLPEHIRVVEMSMNDS 60
           ER DNWRD AVHAQ VF +VA AIS+FE VTVCAS++QWE AR+ LP+H+RVVE+S NDS
Sbjct: 31  ERADNWRDGAVHAQLVFTRVAAAISRFEKVTVCASSAQWENARNQLPDHVRVVEISSNDS 90

Query: 61  WFRDTGPTFVVN--ASNSSSPGQKVAGIDWKFNSWGGVDDGCYQDWSLDLLVARKILQIE 118
           WFRD GPTFVV    S S     ++AGIDW FNSWGG++DGCY DWSLD LV +KIL +E
Sbjct: 91  WFRDIGPTFVVRRETSKSDDAEHRIAGIDWTFNSWGGLEDGCYCDWSLDSLVKKKILDVE 150

Query: 119 KLPRFPHFMILEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKEQIENQLKEYLGVQKVIW 178
           ++PRF H M+LEGGSIHVDGEGTC+TTEECLLNKNRNPHL+K QIE++LK YLGV+KVIW
Sbjct: 151 RIPRFSHSMVLEGGSIHVDGEGTCITTEECLLNKNRNPHLSKSQIEDELKAYLGVRKVIW 210

Query: 179 LPRGLYGDDDTNGHIDNMCCFVRPGVVLLSWVDDKKDPQFARSTEALFVLSNTTDAKGRK 238
           LPRGLYGDDDTNGH+DNMCCFVRPG VLLSW DDK DPQ+ RS EA  + S+ TDA GRK
Sbjct: 211 LPRGLYGDDDTNGHVDNMCCFVRPGAVLLSWTDDKTDPQYERSEEAYSLFSSVTDANGRK 270

Query: 239 LQIIKIHVPGPLYMTDEEAAGVIQ 262
            ++IK+HVPGPLYMT++EAAGV Q
Sbjct: 271 FEVIKLHVPGPLYMTEKEAAGVFQ 294


>IMGA|Medtr8g115390.2 Porphyromonas-type peptidyl-arginine deiminase
           chr08_pseudomolecule_IMGAG_V3 25901436-25898156 E
           EGN_Mt090430 20090702
          Length = 164

 Score =  241 bits (614), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 107/136 (78%), Positives = 122/136 (89%)

Query: 127 MILEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKEQIENQLKEYLGVQKVIWLPRGLYGD 186
           M+LEGGSIHVDGEGTC+TTEECLLNKNRNPHL+K QIE++LK YLGV+KVIWLPRGLYGD
Sbjct: 1   MVLEGGSIHVDGEGTCITTEECLLNKNRNPHLSKSQIEDELKAYLGVRKVIWLPRGLYGD 60

Query: 187 DDTNGHIDNMCCFVRPGVVLLSWVDDKKDPQFARSTEALFVLSNTTDAKGRKLQIIKIHV 246
           DDTNGH+DNMCCFVRPG VLLSW DDK DPQ+ RS EA  + S+ TDA GRK ++IK+HV
Sbjct: 61  DDTNGHVDNMCCFVRPGAVLLSWTDDKTDPQYERSEEAYSLFSSVTDANGRKFEVIKLHV 120

Query: 247 PGPLYMTDEEAAGVIQ 262
           PGPLYMT++EAAGV Q
Sbjct: 121 PGPLYMTEKEAAGVFQ 136


>IMGA|Medtr8g115290.1 Porphyromonas-type peptidyl-arginine deiminase
           chr08_pseudomolecule_IMGAG_V3 25853853-25854606 H
           EGN_Mt090430 20090702
          Length = 81

 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 57/73 (78%), Gaps = 1/73 (1%)

Query: 270 LPGTRLAASYVNFYIANGGIITPQFGDQERDDEAVRVLSQAFPNHEV-VRIEGAREIVLG 328
            P   L    VNFYIANG II PQFGD++ DDEA+RVLS AFP+HEV   IEG+REIVL 
Sbjct: 8   FPVLGLLLPNVNFYIANGAIIAPQFGDKKWDDEAIRVLSMAFPHHEVSCGIEGSREIVLS 67

Query: 329 GGNIHCITQQQPA 341
           GG+IHCITQQQPA
Sbjct: 68  GGDIHCITQQQPA 80