Jatropha Genome Database

JcCB0176301.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0176301.20 + phase: 0 
         (136 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g068360.1 Histone-like transcription factor CBF/NF-Y/...   196   3e-51
IMGA|Medtr7g120830.1 Transcription factor CBF/NF-Y/archaeal hist...   195   5e-51
IMGA|Medtr1g086990.1 Transcription factor CBF/NF-Y/archaeal hist...   184   2e-47
IMGA|Medtr5g103350.1 Histone-like transcription factor CBF/NF-Y/...   178   7e-46
IMGA|Medtr4g140740.1 Transcription factor CBF/NF-Y/archaeal hist...   173   2e-44
IMGA|Medtr4g143060.1 Transcription factor CBF/NF-Y/archaeal hist...   166   2e-42
IMGA|Medtr8g139040.1 Transcription factor CBF/NF-Y/archaeal hist...   147   1e-36
IMGA|Medtr1g046630.1 Transcription factor CBF/NF-Y/archaeal hist...   146   4e-36
IMGA|Medtr1g099630.1 Transcription factor CBF/NF-Y/archaeal hist...   124   1e-29
IMGA|Medtr5g103500.1 Histone-fold/TFIID-TAF/NF-Y chr05_pseudomol...    81   2e-16
IMGA|Medtr8g115740.1 Histone-fold/TFIID-TAF/NF-Y chr08_pseudomol...    69   7e-13

>IMGA|Medtr7g068360.1 Histone-like transcription factor
           CBF/NF-Y/archaeal histone, subunit A; Transcription
           factor CBF/NF-Y/archaeal histone
           chr07_pseudomolecule_IMGAG_V3 13992380-13994623 E
           EGN_Mt090430 20090702
          Length = 187

 Score =  196 bits (498), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 91/95 (95%), Positives = 94/95 (98%)

Query: 26  SNFREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREK 85
           SN REQDR+LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREK
Sbjct: 22  SNIREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREK 81

Query: 86  RKTINGDDLLWAMATLGFEDYIDPLKIYLSRYREV 120
           RKTINGDDLLWAMATLGFEDYIDPLKIYL+RYRE+
Sbjct: 82  RKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREM 116


>IMGA|Medtr7g120830.1 Transcription factor CBF/NF-Y/archaeal histone
           chr07_pseudomolecule_IMGAG_V3 28310079-28318474 H
           EGN_Mt090430 20090702
          Length = 227

 Score =  195 bits (496), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 91/95 (95%), Positives = 94/95 (98%)

Query: 26  SNFREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREK 85
           SN REQDR+LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREK
Sbjct: 89  SNIREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREK 148

Query: 86  RKTINGDDLLWAMATLGFEDYIDPLKIYLSRYREV 120
           RKTINGDDLLWAMATLGFEDYIDPLKIYL+RYRE+
Sbjct: 149 RKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREM 183


>IMGA|Medtr1g086990.1 Transcription factor CBF/NF-Y/archaeal
           histone; Histone-fold/TFIID-TAF/NF-Y
           chr01_pseudomolecule_IMGAG_V3 17393633-17389739 E
           EGN_Mt090430 20090702
          Length = 174

 Score =  184 bits (466), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 84/96 (87%), Positives = 94/96 (97%)

Query: 24  SNSNFREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQR 83
           S+S  REQDR+LPIANISRIMKKALP+NGKIAKDAK+T+QECVSEFISFITSEAS+KCQ+
Sbjct: 23  SSSASREQDRFLPIANISRIMKKALPSNGKIAKDAKDTMQECVSEFISFITSEASEKCQK 82

Query: 84  EKRKTINGDDLLWAMATLGFEDYIDPLKIYLSRYRE 119
           EKRKTINGDDLLWAMATLGFEDYI+PLK+YL+RYRE
Sbjct: 83  EKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYRE 118


>IMGA|Medtr5g103350.1 Histone-like transcription factor
           CBF/NF-Y/archaeal histone, subunit A; Transcription
           factor CBF/NF-Y/archaeal histone
           chr05_pseudomolecule_IMGAG_V3 41407023-41408022 F
           EGN_Mt090430 20090702
          Length = 184

 Score =  178 bits (451), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 80/92 (86%), Positives = 88/92 (95%)

Query: 29  REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 88
           REQDR+LPIAN+SRIMKKALPAN KI+KDAKETVQECVSEFISFIT EASDKCQREKRKT
Sbjct: 22  REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 81

Query: 89  INGDDLLWAMATLGFEDYIDPLKIYLSRYREV 120
           INGDDLLWAM TLGFE+Y++PLKIYL R+RE+
Sbjct: 82  INGDDLLWAMTTLGFEEYVEPLKIYLQRFREI 113


>IMGA|Medtr4g140740.1 Transcription factor CBF/NF-Y/archaeal
           histone; Histone-fold/TFIID-TAF/NF-Y
           chr04_pseudomolecule_IMGAG_V3 34593832-34594591 E
           EGN_Mt090430 20090702
          Length = 201

 Score =  173 bits (438), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 76/92 (82%), Positives = 87/92 (94%)

Query: 29  REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 88
           +EQDR+LPIAN+SRIMK+ALPAN KI+K+AKETVQECVSEFISFIT EASDKCQREKRKT
Sbjct: 27  KEQDRFLPIANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKT 86

Query: 89  INGDDLLWAMATLGFEDYIDPLKIYLSRYREV 120
           INGDDLLWAM TLGFE+Y+ PLK+YL+ YRE+
Sbjct: 87  INGDDLLWAMTTLGFENYVGPLKVYLNNYREI 118


>IMGA|Medtr4g143060.1 Transcription factor CBF/NF-Y/archaeal
           histone; Histone-fold/TFIID-TAF/NF-Y
           chr04_pseudomolecule_IMGAG_V3 35761704-35762348 H
           EGN_Mt090430 20090702
          Length = 214

 Score =  166 bits (421), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 71/92 (77%), Positives = 86/92 (93%)

Query: 29  REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 88
           +EQDR+LPIAN+ RIMKK +PANGKI+KDAKETVQECVSEFISF+T EASDKCQREKRKT
Sbjct: 39  KEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 98

Query: 89  INGDDLLWAMATLGFEDYIDPLKIYLSRYREV 120
           INGDD++WA+ TLGFE+Y++PLK YL +YR++
Sbjct: 99  INGDDIIWAITTLGFEEYVEPLKCYLQKYRDI 130


>IMGA|Medtr8g139040.1 Transcription factor CBF/NF-Y/archaeal
           histone; Histone-fold/TFIID-TAF/NF-Y
           chr08_pseudomolecule_IMGAG_V3 33818172-33819227 E
           EGN_Mt090430 20090702
          Length = 128

 Score =  147 bits (372), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 62/95 (65%), Positives = 83/95 (87%)

Query: 28  FREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 87
            +EQDR LPIAN+ RIMK+ LP N KI+K++KET+QECVSEFISF+TSEAS+KC++E+RK
Sbjct: 19  IKEQDRLLPIANVGRIMKQILPQNAKISKESKETMQECVSEFISFVTSEASEKCRKERRK 78

Query: 88  TINGDDLLWAMATLGFEDYIDPLKIYLSRYREVNL 122
           T+NGDD+ WA+ TLGF+DY +P++ YL RYRE+ +
Sbjct: 79  TVNGDDICWALGTLGFDDYAEPMRRYLHRYRELEV 113


>IMGA|Medtr1g046630.1 Transcription factor CBF/NF-Y/archaeal
           histone; Histone-fold/TFIID-TAF/NF-Y
           chr01_pseudomolecule_IMGAG_V3 10947584-10947012 H
           EGN_Mt090430 20090702
          Length = 190

 Score =  146 bits (368), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 61/94 (64%), Positives = 80/94 (85%)

Query: 26  SNFREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREK 85
           +  REQD+Y+PIAN+ RIM++ LP++ KI+ DAKET+QECVSE+ISFITSEA+D+CQRE+
Sbjct: 2   AGIREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITSEANDRCQREQ 61

Query: 86  RKTINGDDLLWAMATLGFEDYIDPLKIYLSRYRE 119
           RKT+  +D+LWAM  LGF+DY+ PL  YL RYRE
Sbjct: 62  RKTVTAEDILWAMGKLGFDDYVHPLTFYLQRYRE 95


>IMGA|Medtr1g099630.1 Transcription factor CBF/NF-Y/archaeal
           histone; Histone-fold/TFIID-TAF/NF-Y
           chr01_pseudomolecule_IMGAG_V3 20433180-20432589 E
           EGN_Mt090430 20090702
          Length = 127

 Score =  124 bits (311), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 73/93 (78%)

Query: 30  EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTI 89
           E D+ LPIAN+ RIMK+ LP N KI+K++K+ +QEC +EFISF+T EASDKC +E RKT+
Sbjct: 4   EGDKTLPIANVGRIMKQNLPPNAKISKESKQLMQECATEFISFVTGEASDKCHKENRKTV 63

Query: 90  NGDDLLWAMATLGFEDYIDPLKIYLSRYREVNL 122
           NGDD+ WA+ +LGF++Y + +  YL ++R+  L
Sbjct: 64  NGDDICWALCSLGFDNYAEAIGRYLYKFRQAEL 96


>IMGA|Medtr5g103500.1 Histone-fold/TFIID-TAF/NF-Y
           chr05_pseudomolecule_IMGAG_V3 41467809-41470101 E
           EGN_Mt090430 20090702
          Length = 195

 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 52/74 (70%)

Query: 33  RYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGD 92
           R  PIAN+ R+MKKALP + KI  ++KE + +  +EFISF+T+EA+  C+ + R TI  +
Sbjct: 31  RAFPIANVHRLMKKALPRHAKITDESKEIMVKYAAEFISFVTAEANHYCKLDCRTTITAE 90

Query: 93  DLLWAMATLGFEDY 106
           DLL  M  LGF+DY
Sbjct: 91  DLLATMQKLGFDDY 104


>IMGA|Medtr8g115740.1 Histone-fold/TFIID-TAF/NF-Y
           chr08_pseudomolecule_IMGAG_V3 26066308-26070822 E
           EGN_Mt090430 20090702
          Length = 156

 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 55/78 (70%)

Query: 31  QDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTIN 90
           +D  LP A +++I+K+ LP + ++A+D ++ + EC  EFI+ I+SE+++ C RE ++TI 
Sbjct: 12  EDASLPKATMTKIIKEMLPQDVRVARDTQDLLIECCVEFINLISSESNEVCSREDKRTIA 71

Query: 91  GDDLLWAMATLGFEDYID 108
            + +L A+  LGF +YI+
Sbjct: 72  PEHVLKALQVLGFGEYIE 89