Jatropha Genome Database
- JcCB0175111.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0175111.10 + phase: 0 /partial
(129 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|AC233682_19.1 Helix-loop-helix DNA-binding AC233682.2 73932... 125 5e-30
IMGA|Medtr4g142590.1 Helix-loop-helix DNA-binding chr04_pseudomo... 67 3e-12
IMGA|Medtr3g147680.1 Helix-loop-helix DNA-binding chr03_pseudomo... 66 5e-12
IMGA|Medtr7g075730.1 Helix-loop-helix DNA-binding chr07_pseudomo... 65 9e-12
IMGA|Medtr2g103400.1 Helix-loop-helix DNA-binding chr02_pseudomo... 62 1e-10
IMGA|Medtr5g086970.1 Helix-loop-helix DNA-binding chr05_pseudomo... 55 9e-09
IMGA|Medtr1g135070.1 Helix-loop-helix DNA-binding chr01_pseudomo... 55 1e-08
IMGA|Medtr1g023470.1 Helix-loop-helix DNA-binding chr01_pseudomo... 53 4e-08
IMGA|Medtr1g023200.1 Helix-loop-helix DNA-binding chr01_pseudomo... 53 4e-08
IMGA|Medtr5g005270.1 Helix-loop-helix DNA-binding chr05_pseudomo... 52 9e-08
IMGA|Medtr5g005100.1 Helix-loop-helix DNA-binding chr05_pseudomo... 52 9e-08
IMGA|Medtr5g017180.1 Helix-loop-helix DNA-binding chr05_pseudomo... 51 2e-07
IMGA|Medtr1g135060.1 Helix-loop-helix DNA-binding chr01_pseudomo... 50 3e-07
IMGA|Medtr2g121770.1 Helix-loop-helix DNA-binding chr02_pseudomo... 47 2e-06
>IMGA|AC233682_19.1 Helix-loop-helix DNA-binding AC233682.2
73932-72796 H EGN_Mt090430 20090702
Length = 298
Score = 125 bits (314), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 84/117 (71%), Gaps = 3/117 (2%)
Query: 6 RSVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVLRFL 65
R++S+QSIAARERRRKIT+KTQ LG+L+PGG KMNTAEML AA YVK+LQAQ+G+L+ +
Sbjct: 163 RTISSQSIAARERRRKITEKTQELGKLVPGGPKMNTAEMLNAAANYVKFLQAQVGMLQLM 222
Query: 66 --FGSSQLKAKDIKELQILGSASF-QEKLYMQEKCLVPNEIALILTNNQDVNSDTSI 119
F + + +EL L + F QEKLY +EKC VP E L+N+ DV S +I
Sbjct: 223 ETFSKEEKEPPPSEELHKLVVSPFVQEKLYSEEKCFVPKEFVTTLSNHDDVQSKPTI 279
>IMGA|Medtr4g142590.1 Helix-loop-helix DNA-binding
chr04_pseudomolecule_IMGAG_V3 35530464-35531363 H
EGN_Mt090430 20090702
Length = 275
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 44/57 (77%)
Query: 7 SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVLR 63
S QS+AAR RR +I++K ++L RL+PGG+KM+TA ML A +YVK+L+ Q+ +L+
Sbjct: 121 SEDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIKLLQ 177
>IMGA|Medtr3g147680.1 Helix-loop-helix DNA-binding
chr03_pseudomolecule_IMGAG_V3 38286443-38284836 H
EGN_Mt090430 20090702
Length = 280
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 42/57 (73%)
Query: 7 SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVLR 63
S QSIAAR RR +I++K ++L R++PGG+KM+TA ML A YVK+L+ QL L+
Sbjct: 178 SKDPQSIAARHRRERISEKIRILQRMVPGGTKMDTASMLDEAIHYVKFLKTQLKSLQ 234
>IMGA|Medtr7g075730.1 Helix-loop-helix DNA-binding
chr07_pseudomolecule_IMGAG_V3 15246073-15245215 E
EGN_Mt090430 20090702
Length = 153
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 41/55 (74%)
Query: 7 SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGV 61
S QS+AARERR +I+D+ ++L +IPGGSK++T ML+ A YVK+L+ Q+ +
Sbjct: 33 STDPQSVAARERRHRISDRFKILQSMIPGGSKLDTVSMLEEAIHYVKFLKKQIWL 87
>IMGA|Medtr2g103400.1 Helix-loop-helix DNA-binding
chr02_pseudomolecule_IMGAG_V3 24093436-24094293 H
EGN_Mt090430 20090702
Length = 285
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 41/54 (75%)
Query: 10 AQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVLR 63
QS AR+RR+K+++KT+ L +L+P +M+ A + + AYKYVK+LQAQL VL+
Sbjct: 146 PQSNLARQRRQKLSEKTRCLQKLMPWDKRMDQATLYEEAYKYVKFLQAQLSVLQ 199
>IMGA|Medtr5g086970.1 Helix-loop-helix DNA-binding
chr05_pseudomolecule_IMGAG_V3 33511786-33513858 E
EGN_Mt090430 20090702
Length = 311
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 7 SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVLRF-- 64
S QS+AA+ RR +I+++ ++L L+P GSK++ ML+ A YVK+LQ Q+ VL
Sbjct: 225 SKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADE 284
Query: 65 LFGSSQLKAKDIKELQ 80
+ + KA DI +++
Sbjct: 285 FWPVNGGKAPDIGQVK 300
>IMGA|Medtr1g135070.1 Helix-loop-helix DNA-binding
chr01_pseudomolecule_IMGAG_V3 30099373-30097897 E
EGN_Mt090430 20090702
Length = 287
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 41/56 (73%)
Query: 7 SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVL 62
+ AQSI AR+RR +I ++ ++L L+P G+K++ + ML+ A +YVK+LQ Q+ +L
Sbjct: 203 ATDAQSIYARKRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKLL 258
>IMGA|Medtr1g023470.1 Helix-loop-helix DNA-binding
chr01_pseudomolecule_IMGAG_V3 5244087-5246048 E
EGN_Mt090430 20090702
Length = 366
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 7 SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVL 62
+ QS+ AR+RR +I ++ ++L L+P G+K++ + ML+ A YVK+LQ Q+ +L
Sbjct: 281 ATDPQSLYARKRRERINERLRVLQNLVPNGTKVDISTMLEEAVNYVKFLQTQIKLL 336
>IMGA|Medtr1g023200.1 Helix-loop-helix DNA-binding
chr01_pseudomolecule_IMGAG_V3 5085290-5087252 E
EGN_Mt090430 20090702
Length = 366
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 7 SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVL 62
+ QS+ AR+RR +I ++ ++L L+P G+K++ + ML+ A YVK+LQ Q+ +L
Sbjct: 281 ATDPQSLYARKRRERINERLRVLQNLVPNGTKVDISTMLEEAVNYVKFLQTQIKLL 336
>IMGA|Medtr5g005270.1 Helix-loop-helix DNA-binding
chr05_pseudomolecule_IMGAG_V3 104132-105908 E
EGN_Mt090430 20090702
Length = 331
Score = 51.6 bits (122), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 39/53 (73%)
Query: 10 AQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVL 62
QS+ AR+RR +I ++ ++L L+P G+K++ + ML+ A +YVK+LQ Q+ +L
Sbjct: 234 PQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLL 286
>IMGA|Medtr5g005100.1 Helix-loop-helix DNA-binding
chr05_pseudomolecule_IMGAG_V3 38628-36852 E EGN_Mt090430
20090702
Length = 331
Score = 51.6 bits (122), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 39/53 (73%)
Query: 10 AQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVL 62
QS+ AR+RR +I ++ ++L L+P G+K++ + ML+ A +YVK+LQ Q+ +L
Sbjct: 234 PQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLL 286
>IMGA|Medtr5g017180.1 Helix-loop-helix DNA-binding
chr05_pseudomolecule_IMGAG_V3 6121090-6121833 H
EGN_Mt090430 20090702
Length = 247
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 41/56 (73%)
Query: 7 SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVL 62
S QS+AAR RR +I+++ ++L RL+PGG+KM+TA ML A YVK+L+ Q+ L
Sbjct: 144 SKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTL 199
>IMGA|Medtr1g135060.1 Helix-loop-helix DNA-binding
chr01_pseudomolecule_IMGAG_V3 30094588-30092473 H
EGN_Mt090430 20090702
Length = 330
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 38/53 (71%)
Query: 10 AQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVL 62
Q + A++RR +I ++ ++L L+P G+K++ + ML+ A +YVK+LQ Q+ +L
Sbjct: 248 PQGVYAKKRRERINERLKILQSLVPNGTKVDISTMLEEAVQYVKFLQVQIKLL 300
>IMGA|Medtr2g121770.1 Helix-loop-helix DNA-binding
chr02_pseudomolecule_IMGAG_V3 28971367-28970189 H
EGN_Mt090430 20090702
Length = 392
Score = 47.0 bits (110), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 42/53 (79%)
Query: 7 SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQL 59
S Q++AAR+RR +I+++ ++L +++PGG+KM+TA ML A Y+K+L+AQ+
Sbjct: 297 SKDPQTVAARQRRERISERIRVLQKIVPGGTKMDTASMLDEAANYLKFLRAQV 349