Jatropha Genome Database
- JcCB0175021.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0175021.10 + phase: 0 /pseudo
(131 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr8g073680.1 Cyclin-like; ; chr08_pseudomolecule_IMGAG_V... 136 2e-33
IMGA|Medtr5g036580.1 Cyclin, N-terminal; chr05_pseudomolecule_IM... 120 2e-28
IMGA|Medtr4g110740.1 Cyclin-like; chr04_pseudomolecule_IMGAG_V3 ... 77 2e-15
IMGA|Medtr3g148920.1 Cyclin, N-terminal; chr03_pseudomolecule_IM... 75 1e-14
IMGA|Medtr5g033980.1 Cyclin, N-terminal; chr05_pseudomolecule_IM... 74 2e-14
IMGA|Medtr5g074890.1 Cyclin, N-terminal; chr05_pseudomolecule_IM... 64 2e-11
IMGA|Medtr3g147210.1 Cyclin, N-terminal; chr03_pseudomolecule_IM... 59 6e-10
IMGA|Medtr8g081490.1 Cyclin-like; chr08_pseudomolecule_IMGAG_V3 ... 49 1e-06
>IMGA|Medtr8g073680.1 Cyclin-like; ; chr08_pseudomolecule_IMGAG_V3
14458344-14461283 E EGN_Mt090430 20090702
Length = 355
Score = 136 bits (343), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/126 (61%), Positives = 90/126 (71%), Gaps = 14/126 (11%)
Query: 6 SDCFTDLLCSEDSSEIFSAESPECSSDLESPAFI------------EESIASFIEDERNF 53
SDC +LLC EDSSE+ + + PECSSDL+S + EESIA FIE E F
Sbjct: 17 SDC--ELLCGEDSSEVLTGDLPECSSDLDSSSSSQLPSSSLFAEEEEESIAVFIEHEFKF 74
Query: 54 VPGFDYLSRFQSRSLDASAREESVAWILKVQAYYSFQPLTAYLSVNYLDRFLYSRPLPVS 113
VPGFDY+SRFQSRSL++S REE++AWILKV YY FQPLTAYLSVNY+DRFL SRPLP S
Sbjct: 75 VPGFDYVSRFQSRSLESSTREEAIAWILKVHEYYGFQPLTAYLSVNYMDRFLDSRPLPES 134
Query: 114 CSLKLN 119
L
Sbjct: 135 NGWPLQ 140
>IMGA|Medtr5g036580.1 Cyclin, N-terminal;
chr05_pseudomolecule_IMGAG_V3 15257494-15261890 E
EGN_Mt090430 20090702
Length = 334
Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 82/115 (71%), Gaps = 4/115 (3%)
Query: 1 MSLPCSDCFTD--LLCSEDSSEIFSAESP-ECSSDLES-PAFIEESIASFIEDERNFVPG 56
MS+ S+ FTD LLC E++S I S++SP E SD ES P +E IA IEDE FV G
Sbjct: 1 MSISYSNFFTDSDLLCGEETSSILSSDSPTESFSDGESYPPPEDEFIAGLIEDEGKFVIG 60
Query: 57 FDYLSRFQSRSLDASAREESVAWILKVQAYYSFQPLTAYLSVNYLDRFLYSRPLP 111
FDY + +S S D+ AR+ES+ WILKVQ YY FQP+TAYL+VNY+DRFL SR LP
Sbjct: 61 FDYFVKMKSSSFDSDARDESIRWILKVQGYYGFQPVTAYLAVNYMDRFLNSRRLP 115
>IMGA|Medtr4g110740.1 Cyclin-like; chr04_pseudomolecule_IMGAG_V3
25190614-25189586 E EGN_Mt090430 20090702
Length = 342
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Query: 4 PCSDCFTDLLCSEDSSEIF--------------------SAESPECSSDLESPAFIEESI 43
P DC LLC+E+ S +F S ++L P EE +
Sbjct: 3 PSFDCVASLLCTEEDSSVFDDVEYGGSMEDYEDLWHPRNEQRSGGVPNELHLPLQSEECL 62
Query: 44 ASFIEDERNFVPGFDYLSRFQSRSLDASAREESVAWILKVQAYYSFQPLTAYLSVNYLDR 103
+E E G DYL+R + LD AR E++ WI KVQ+++ F PL YLS+NY+DR
Sbjct: 63 VLMLEKECQQWHGADYLNRLKFGDLDFGARNEAIDWIQKVQSHFGFGPLCVYLSINYMDR 122
Query: 104 FLYSRPLP 111
FL + P
Sbjct: 123 FLSAYQFP 130
>IMGA|Medtr3g148920.1 Cyclin, N-terminal;
chr03_pseudomolecule_IMGAG_V3 38842119-38844522 E
EGN_Mt090430 20090702
Length = 362
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 62/133 (46%), Gaps = 25/133 (18%)
Query: 4 PCSDCFTDLLCSEDSSEIF------SAESPECSSDL-------------------ESPAF 38
P DC + LLC+E+ S +F S E D E P
Sbjct: 3 PSFDCVSSLLCTEEDSSVFDDAEYGGGGSVEVYGDSWRPRNDHQMTQQRYDGVPDELPLQ 62
Query: 39 IEESIASFIEDERNFVPGFDYLSRFQSRSLDASAREESVAWILKVQAYYSFQPLTAYLSV 98
EE + +E E PG DYL++ + LD AR E + WI KV+A++ F PL AYLS+
Sbjct: 63 SEECLVLMLEKECQQWPGADYLNKLRFGDLDFEARNEVIDWIQKVRAHFGFGPLCAYLSI 122
Query: 99 NYLDRFLYSRPLP 111
NY+DRFL P
Sbjct: 123 NYMDRFLSVYEFP 135
>IMGA|Medtr5g033980.1 Cyclin, N-terminal;
chr05_pseudomolecule_IMGAG_V3 13863356-13865801 E
EGN_Mt090430 20090702
Length = 346
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 70/130 (53%), Gaps = 21/130 (16%)
Query: 10 TDLLCSEDSSEIF-------SAESPECSS------DLESPAFI------EESIASFIEDE 50
++LLCSE++S F S SP ++ S +F+ EE + +E E
Sbjct: 10 SNLLCSENNSTCFDDVVVDDSGISPSWDHTNVNLDNVGSDSFLCFVAQSEEIVKVMVEKE 69
Query: 51 RNFVPGFDYLSRFQSRSLDASAREESVAWILKVQAYYSFQPLTAYLSVNYLDRFL--YSR 108
++ +P DYL R + LD S R E++ WI K AYY F PL+ LSVNYLDRFL +
Sbjct: 70 KDHLPREDYLIRLRGGDLDLSVRREALDWIWKAHAYYGFGPLSLCLSVNYLDRFLSVFQF 129
Query: 109 PLPVSCSLKL 118
P V+ +++L
Sbjct: 130 PRGVTWTVQL 139
>IMGA|Medtr5g074890.1 Cyclin, N-terminal;
chr05_pseudomolecule_IMGAG_V3 27127902-27126181 E
EGN_Mt090430 20090702
Length = 169
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 18/114 (15%)
Query: 9 FTDLLCSEDSSEIFSAESPECSSDLESPAF-----------------IEESIASFIEDER 51
F+ LLC+EDSS I S + E+ F EE++ IE E
Sbjct: 8 FSCLLCTEDSS-ILDENDLGGSMEDETEQFDEPIEYVPPPLLPPPLLSEENLKVLIEKEC 66
Query: 52 NFVPGFDYLSRFQSRSLDASAREESVAWILKVQAYYSFQPLTAYLSVNYLDRFL 105
+ +P DY++R ++ LD R ES+ W+ K Y+ F PL YL++ Y+DRFL
Sbjct: 67 HHLPASDYVNRLKNGELDLQGRMESIDWMEKAGLYFGFGPLCIYLAIRYMDRFL 120
>IMGA|Medtr3g147210.1 Cyclin, N-terminal;
chr03_pseudomolecule_IMGAG_V3 38034798-38033266 F
EGN_Mt090430 20090702
Length = 348
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
Query: 33 LESPAFIE-ESIASFIEDERNFVPGFDYLSRFQSRSLDASAREESVAWILKVQAYYSFQP 91
LE+ F E E + S + E+ P + +L Q+ + +AR ES+ WILKV A+YSF
Sbjct: 48 LETDMFWEDEELKSLLNKEQQ-NPLYIFL---QTNPVLETARRESIEWILKVNAHYSFSA 103
Query: 92 LTAYLSVNYLDRFLYS 107
LT+ L+VNYLDRFL+S
Sbjct: 104 LTSVLAVNYLDRFLFS 119
>IMGA|Medtr8g081490.1 Cyclin-like; chr08_pseudomolecule_IMGAG_V3
16707592-16709588 H EGN_Mt090430 20090702
Length = 374
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 38 FIEESIASFIEDERNFVPGFDYLSRFQSRSLD--------------ASAREESVAWILKV 83
I E++ S ++ E +P DYL R + ++ R E++ W+ K
Sbjct: 59 LINETVLSLVKRESEHLPRDDYLERLRGEDINLKFRDLNLNMNLNLNGIRREAIEWMWKA 118
Query: 84 QAYYSFQPLTAYLSVNYLDRFL 105
A Y F P L+VNY+DRFL
Sbjct: 119 AACYGFGPCIFSLAVNYVDRFL 140