Jatropha Genome Database

JcCB0174101.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0174101.20 + phase: 0 /partial
         (226 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g019680.1 Stage II sporulation E chr05_pseudomolecule...   190   5e-49
IMGA|Medtr3g033950.1 Protein phosphatase 2C-like chr03_pseudomol...   102   2e-22
IMGA|Medtr2g008670.1 Protein phosphatase 2C-like chr02_pseudomol...    97   5e-21

>IMGA|Medtr5g019680.1 Stage II sporulation E
           chr05_pseudomolecule_IMGAG_V3 7366282-7363304 E
           EGN_Mt090430 20090702
          Length = 452

 Score =  190 bits (483), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 99/193 (51%), Positives = 128/193 (66%), Gaps = 3/193 (1%)

Query: 32  DDQTLKMNAGAFYLPKDDKERPQGEDAHFICKEKLTIGVADGVGGWARKGVDAGIYARRL 91
           D + LKM +G+ YLP  DK    GEDAHFIC+++  IGVADGVGGWA  GV+AG+YA+ L
Sbjct: 197 DRKPLKMLSGSCYLPHPDKVATGGEDAHFICEDEQAIGVADGVGGWADVGVNAGLYAQEL 256

Query: 92  MENSIIALQGEKKGSVNPRKVLQEAYSNTNVKGSSTACIIT-IDSNNCLHYVNLGDSGFL 150
           + NS  A++ E KGS NP +VL++A+S T   GSST CII  ID    L+ +NLGDSGF+
Sbjct: 257 VANSARAIREEPKGSFNPVRVLEKAHSKTKAMGSSTVCIIALIDEVKALNAINLGDSGFI 316

Query: 151 LFRENKYIYKSKVQQHEFNHPYQLGTCSD--DLPCLAYEEKILVEAGDIVVAGTDGLLDN 208
           + R+   I+KS VQQ  FN PYQL       DLP       + V  GDI+VAGTDGL DN
Sbjct: 317 VIRDGSVIFKSPVQQRGFNFPYQLARSGTEGDLPSSGEVFTVPVAPGDIIVAGTDGLFDN 376

Query: 209 IYPSEITKILEKA 221
           +Y ++I  ++  A
Sbjct: 377 MYNNDIVGVVVGA 389


>IMGA|Medtr3g033950.1 Protein phosphatase 2C-like
           chr03_pseudomolecule_IMGAG_V3 9249622-9245558 F
           EGN_Mt090430 20090702
          Length = 309

 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 96/182 (52%), Gaps = 3/182 (1%)

Query: 36  LKMNAGAFYLPKDDKERPQGEDAHFICK-EKLTIGVADGVGGWARKGVDAGIYARRLMEN 94
           +  + G   +P   K    GEDA F+       I VADGV GWA + VD  ++ R LM N
Sbjct: 57  VSFSFGTCLIPHPKKVEKGGEDAFFVSNYNGGVIAVADGVSGWAEEDVDPSLFPRELMAN 116

Query: 95  SIIALQGEKKGSVNPRKVLQEAYSNTNVKGSSTACIITIDSNNCLHYVNLGDSGFLLFRE 154
           +   +Q E+  + +P+ ++++A++ T   GS+T  +  ++ N  L   N+GD G  + R 
Sbjct: 117 AYNFVQDEEVNN-DPQILIRKAHAATFSTGSATVIVAMLEKNGNLKIANVGDCGLRVIRN 175

Query: 155 NKYIYKSKVQQHEFNHPYQLGTCSDDLPCL-AYEEKILVEAGDIVVAGTDGLLDNIYPSE 213
            + I+ +  Q+H F+ PYQL +       L A    + +  GD +V G+DGL DN++  E
Sbjct: 176 GQVIFSTSPQEHYFDCPYQLSSERVGQTYLDAMVSNVELMEGDTIVMGSDGLFDNVFDHE 235

Query: 214 IT 215
           I 
Sbjct: 236 IA 237


>IMGA|Medtr2g008670.1 Protein phosphatase 2C-like
            chr02_pseudomolecule_IMGAG_V3 1728611-1720868 E
            EGN_Mt090430 20090702
          Length = 1256

 Score = 97.4 bits (241), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 63/183 (34%), Positives = 94/183 (51%), Gaps = 4/183 (2%)

Query: 40   AGAFYLPKDDKERPQGEDAHFICKEKLTIGVADGVGGWARKGVDAGIYARRLMEN-SIIA 98
            +GA  LP   +E    EDA+ I      + VADGVG W+ +G + G+Y R LM N   I 
Sbjct: 1016 SGAACLPHPSEELTSREDAYIISPLNWLV-VADGVGQWSLEGSNTGVYIRELMGNCEDIV 1074

Query: 99   LQGEKKGSVNPRKVLQEAYSNTNVKGSSTACIITIDSNNCLHYVNLGDSGFLLFRENKYI 158
               +   ++ P +VL  + S T+  GSS+  +   D    LH  N+G++GF++ R     
Sbjct: 1075 SNCDNISTIKPAEVLIRSASETHSPGSSSVLVAYFDGQ-ALHAANVGNTGFIIIRHGSIF 1133

Query: 159  YKSKVQQHEFNHPYQLGTCSDDLPCLAYEEKILVEAGDIVVAGTDGLLDNIYPSEITKIL 218
              S    HEF+ P  +    DD   +  E KI +  GD++V GT+GL DN+Y  EI   +
Sbjct: 1134 KTSNAMFHEFSFPIHI-VKGDDHSEIIEEYKIDLNDGDMIVFGTNGLFDNLYEKEIASTV 1192

Query: 219  EKA 221
             K+
Sbjct: 1193 SKS 1195