Jatropha Genome Database

JcCB0174071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0174071.10 - phase: 0 /pseudo
         (158 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC225517_26.1 Quinonprotein alcohol dehydrogenase-like AC22...   219   7e-58

>IMGA|AC225517_26.1 Quinonprotein alcohol dehydrogenase-like
           AC225517.6 112314-118182 E EGN_Mt090430 20090702
          Length = 764

 Score =  219 bits (557), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 106/138 (76%), Positives = 114/138 (82%)

Query: 1   MDVAIRVXXXXXXXXXXXXXXXXXYEDQVGLMDWHQQYIGKVKDAVFHTQKTGRKRVVVS 60
           M +AIRV                 YEDQVGLMDWHQQYIGKVK AVFHTQKTGRKRV+VS
Sbjct: 1   MAMAIRVFLSFLLFLSLTNLASSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVLVS 60

Query: 61  TEENVIASLDLRHGEIFWRHVLGTDDVIDGIDIALGKYVITLSSEGSILRAWNLPDGQMV 120
           TEENV+ASLDLRHGEIFWRHVLGT+DV+DGIDIALGKYVITLSS+GSILRAWNLPDGQMV
Sbjct: 61  TEENVVASLDLRHGEIFWRHVLGTNDVVDGIDIALGKYVITLSSDGSILRAWNLPDGQMV 120

Query: 121 WESFLQGPNHSKSLLLVP 138
           WES LQG   SKS+L +P
Sbjct: 121 WESSLQGSKESKSILNIP 138