Jatropha Genome Database

JcCB0173711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0173711.10 + phase: 2 /partial
         (174 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC233662_37.1 Arginine biosynthesis protein ArgJ AC233662.1...   221   1e-58

>IMGA|AC233662_37.1 Arginine biosynthesis protein ArgJ AC233662.1
           191889-184516 E EGN_Mt090430 20090702
          Length = 470

 Score =  221 bits (564), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 105/154 (68%), Positives = 116/154 (75%)

Query: 21  QLQACLDAVMQALAKSVAWDGEGATCLIEVTVTGAESEVKAAKIXXXXXXXXXXXXXXYG 80
           QLQACLDAVMQ LAKS+AWDGEGATCLIEV+VTGA SE +AAK+              YG
Sbjct: 317 QLQACLDAVMQGLAKSIAWDGEGATCLIEVSVTGANSEAEAAKVARSVASSSLVKAAVYG 376

Query: 81  RDPNWGRXXXXXXXXXXPFHQNNLRVMLGDILLMDNGQPLAFDRAAASNYLRKAGETHGT 140
           RDPNWGR           F+QN LRV LGD LLMD G+P +FDR  AS+YLRKAGETHGT
Sbjct: 377 RDPNWGRIAAAAGYSGVSFNQNLLRVELGDTLLMDGGEPQSFDRGEASSYLRKAGETHGT 436

Query: 141 VGIYISVGDGSGHGQAWGCDLSYDYVKINAEYTT 174
           V I IS+G+G GHGQAWGCDLSYDYVKINAEYT+
Sbjct: 437 VRIQISIGNGPGHGQAWGCDLSYDYVKINAEYTS 470