Jatropha Genome Database

JcCB0172651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0172651.10 + phase: 2 /partial
         (172 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g089430.1 Checkpoint protein Rad24 chr08_pseudomolecu...   137   2e-33

>IMGA|Medtr8g089430.1 Checkpoint protein Rad24
           chr08_pseudomolecule_IMGAG_V3 19216485-19222914 E
           EGN_Mt090430 20090702
          Length = 604

 Score =  137 bits (346), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/172 (43%), Positives = 103/172 (59%), Gaps = 5/172 (2%)

Query: 2   PIADFLHENVLDFISDEAMDAAKDVAXXXXXXXXXXXXFRGILARYNEXXXXXXXXXXXX 61
           P+ADFLHENVLDF++DEA++ A  ++             RG+++ YNE            
Sbjct: 437 PVADFLHENVLDFLNDEAVEDAWILSSYLGDADILLTKLRGMVSSYNEAESILQSAAASI 496

Query: 62  XXRGVLFGNSHPSPSRWHAIRRPKLWQVEQSLLLNQKETISQRLTVYGGSSFSNMSDVAA 121
             RGVLFGNS P  SRWHAIRRPKLWQVE+ L   + + + QR+      S  +MS +A 
Sbjct: 497 AVRGVLFGNSCPLSSRWHAIRRPKLWQVEKELSYQKNKMLRQRIPACNQLSSYHMSVMAT 556

Query: 122 EYLPALKSLGDGA-SGFEAHKVHHKGTWDDSSERMSLDDEEGQISDDEIEDW 172
           EY+P  K LG+   SG++  ++H +   D   ++MSLD E  +ISDD+IEDW
Sbjct: 557 EYMPMFKLLGNRVGSGYD--ELHQESNID--IDKMSLDGEAMEISDDDIEDW 604