Jatropha Genome Database

JcCB0172401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0172401.10 - phase: 2 /pseudo/partial
         (166 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g148200.1 Uroporphyrinogen III synthase HEM4 chr03_ps...   194   1e-50
IMGA|Medtr3g148200.2 Uroporphyrinogen III synthase HEM4 chr03_ps...   136   6e-33

>IMGA|Medtr3g148200.1 Uroporphyrinogen III synthase HEM4
           chr03_pseudomolecule_IMGAG_V3 38534730-38540198 E
           EGN_Mt090430 20090702
          Length = 308

 Score =  194 bits (494), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 99/152 (65%), Positives = 116/152 (76%), Gaps = 2/152 (1%)

Query: 1   AAGSPNVNIGVVGAGTASIFNEVMQSSGQVLDISFTPSKATGKVLASELPKSENKTCTVL 60
           AAG P V IGVVG+GTASIF + + SS Q LD++F+PSKATGKVLA+ELP+  NKT T+L
Sbjct: 130 AAGMPRVRIGVVGSGTASIFKDALLSSNQSLDVAFSPSKATGKVLATELPRIGNKT-TIL 188

Query: 61  YPASAKASNEIEEGLSNRGFEVVRLNTYTTVPVDHVDQMVLKQXXXXXXXXXXXXXXXXX 120
           YPASAKASNEIEEGLS+RGFEV R+NTYTTVPV HVDQM+LKQ                 
Sbjct: 189 YPASAKASNEIEEGLSSRGFEVTRMNTYTTVPVQHVDQMILKQALAAPVVTVASPSAIRA 248

Query: 121 XXNLISESEQWNNSVACIGETTASAARRLGLK 152
             NL+S+S+ W+NSVACIGETTA+ A RLG K
Sbjct: 249 WKNLLSDSD-WSNSVACIGETTAAMAGRLGFK 279


>IMGA|Medtr3g148200.2 Uroporphyrinogen III synthase HEM4
           chr03_pseudomolecule_IMGAG_V3 38534730-38537580 E
           EGN_Mt090430 20090702
          Length = 257

 Score =  136 bits (342), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 68/91 (74%), Positives = 79/91 (86%), Gaps = 1/91 (1%)

Query: 1   AAGSPNVNIGVVGAGTASIFNEVMQSSGQVLDISFTPSKATGKVLASELPKSENKTCTVL 60
           AAG P V IGVVG+GTASIF + + SS Q LD++F+PSKATGKVLA+ELP+  NKT T+L
Sbjct: 130 AAGMPRVRIGVVGSGTASIFKDALLSSNQSLDVAFSPSKATGKVLATELPRIGNKT-TIL 188

Query: 61  YPASAKASNEIEEGLSNRGFEVVRLNTYTTV 91
           YPASAKASNEIEEGLS+RGFEV R+NTYTTV
Sbjct: 189 YPASAKASNEIEEGLSSRGFEVTRMNTYTTV 219