Jatropha Genome Database

JcCB0171941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0171941.10 - phase: 0 /pseudo
         (271 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g117440.1 Ribosomal protein S2; Multi antimicrobial e...   270   5e-73
IMGA|Medtr3g028600.1 Multi antimicrobial extrusion protein MatE ...   221   3e-58
IMGA|Medtr8g037070.1 Multi antimicrobial extrusion protein MatE ...   212   2e-55
IMGA|AC235669_11.1 Multi antimicrobial extrusion protein MatE AC...   152   2e-37
IMGA|Medtr7g076340.1 Multi antimicrobial extrusion protein MatE ...   136   1e-32
IMGA|Medtr5g106650.1 Multi antimicrobial extrusion protein MatE ...   123   9e-29
IMGA|Medtr5g106650.2 Multi antimicrobial extrusion protein MatE ...   122   1e-28
IMGA|AC235669_9.1 Multi antimicrobial extrusion protein MatE AC2...   122   1e-28

>IMGA|Medtr2g117440.1 Ribosomal protein S2; Multi antimicrobial
           extrusion protein MatE chr02_pseudomolecule_IMGAG_V3
           27589576-27585050 F EGN_Mt090430 20090702
          Length = 507

 Score =  270 bits (690), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 144/244 (59%), Positives = 169/244 (69%), Gaps = 10/244 (4%)

Query: 4   EDDASYPSMEKKRIPLCIFFKDFRHVLKMDELGLEXXXXXXXXXXXXXXXXXXXLVDTAF 63
           E ++ +   +  RIP+C FFKD R V K+D+LG E                   LVDTAF
Sbjct: 3   EKESLFSIGDWMRIPICTFFKDARLVFKLDDLGREILSIALPAAMALTADPIASLVDTAF 62

Query: 64  IGQIGPVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDTIGSVNPEVQDSESLETG 123
           IGQ+GPVELAAVGVSIALFNQ SRI IFPLVSVTTSFVAEED +   + +V+++  LE  
Sbjct: 63  IGQLGPVELAAVGVSIALFNQASRIFIFPLVSVTTSFVAEEDALSDASSQVEENGCLEAA 122

Query: 124 SVVNSESKELIPQNVSGEGAYKSKSAMSSFDIAKM-ESGRRHIPSASSALVIGAILGFIQ 182
           +  ++E+KE +PQ           S + SF++ K  +  RR IPSASSAL  G +LG +Q
Sbjct: 123 TPPDAETKEFLPQK---------NSVVESFNVVKDDQHKRRQIPSASSALYFGGVLGLVQ 173

Query: 183 AIFLISGAKPLLNFMGVGSDSPMLRPAQQYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTP 242
           A  LIS AKPLLNFMGV SDSPML  AQQYL LRSLGAPAVLLSLAMQGVFRGFKDTKTP
Sbjct: 174 ATILISAAKPLLNFMGVTSDSPMLHHAQQYLKLRSLGAPAVLLSLAMQGVFRGFKDTKTP 233

Query: 243 LYAT 246
           LYAT
Sbjct: 234 LYAT 237


>IMGA|Medtr3g028600.1 Multi antimicrobial extrusion protein MatE
           chr03_pseudomolecule_IMGAG_V3 7395363-7402490 E
           EGN_Mt090430 20090702
          Length = 540

 Score =  221 bits (563), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 131/268 (48%), Positives = 162/268 (60%), Gaps = 28/268 (10%)

Query: 1   MAEEDDASYPSMEKKRIPLCIFFKDFRHVLKMDELGLEXXXXXXXXXXXXXXXXXXXLVD 60
           M + D ++     K  +PL +FFKD   V KMD L  E                   L+D
Sbjct: 1   MDDNDISNNAVKNKWTMPLSVFFKDASLVFKMDSLAKEILGIAFPSALAVAADPIASLID 60

Query: 61  TAFIGQIGPVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDTIGSVNPEVQDSESL 120
           TAFIG +GPVELAA GVSIA+FNQ SRI IFPLVS+TTSFVAEEDT+  +N +  + +  
Sbjct: 61  TAFIGHLGPVELAAAGVSIAVFNQASRITIFPLVSITTSFVAEEDTMDRINTKAAEKQFN 120

Query: 121 ETGSVVNSESKELIP-----QNVSGEGAYKSKSAMSSFDIA---------------KMES 160
           E+G    ++S E++P     Q++   GA K  S + + D A               K ES
Sbjct: 121 ESG---KAKSNEVMPDDHLLQDIEA-GATKQDSTLKNGDDANSNISKSSIVTNSSNKSES 176

Query: 161 G----RRHIPSASSALVIGAILGFIQAIFLISGAKPLLNFMGVGSDSPMLRPAQQYLTLR 216
                +RHI SAS+AL+ G +LG IQA  LI  AKPLL  MG+  DSPML PA +YL LR
Sbjct: 177 KPIRKKRHIASASTALLFGTVLGLIQAATLIFAAKPLLGAMGLKYDSPMLVPAVKYLRLR 236

Query: 217 SLGAPAVLLSLAMQGVFRGFKDTKTPLY 244
           +LGAPAVLLSLAMQG+FRGFKDT TPLY
Sbjct: 237 ALGAPAVLLSLAMQGIFRGFKDTTTPLY 264


>IMGA|Medtr8g037070.1 Multi antimicrobial extrusion protein MatE
           chr08_pseudomolecule_IMGAG_V3 7943388-7936162 E
           EGN_Mt090430 20090702
          Length = 620

 Score =  212 bits (539), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 129/281 (45%), Positives = 158/281 (56%), Gaps = 38/281 (13%)

Query: 1   MAEEDDASYPSMEKKRIPLCIFFKDFRHVLKMDELGLEXXXXXXXXXXXXXXXXXXXLVD 60
           M E  +A+ P+ +K + P  +FF D R + K+D L  E                   L+D
Sbjct: 69  MNENGNANEPN-KKWKFPFLVFFNDARLIFKLDALSKEILGIAIPSALAVAADPIASLID 127

Query: 61  TAFIGQIGPVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDTIGSVN--------- 111
           TAFIG +GPVELAA GVSIALFNQ S+I IFPLVS+TTSFVAEEDTI  +N         
Sbjct: 128 TAFIGHLGPVELAAAGVSIALFNQASKITIFPLVSITTSFVAEEDTIKRMNIKAAENDKS 187

Query: 112 ------PEVQDSESLETG-----------SVV-----------NSESKELIPQNVSGEGA 143
                 PE    + +E G           SVV           N ++  ++  N      
Sbjct: 188 KLTEVTPESDVVQDIEKGTPKESNKAQKESVVGHNETNGTLGNNDKTNGVVMNNEQEPHL 247

Query: 144 YKSKSAMSSFDIAKMESGRRHIPSASSALVIGAILGFIQAIFLISGAKPLLNFMGVGSDS 203
             S S  S      ++  +RHI SAS+AL+ G+ILG +QA  LI GAKPLL  MGV   S
Sbjct: 248 LSSDSRSSKIKEIVVKKKKRHIASASTALLFGSILGLLQASVLIFGAKPLLYVMGVKHGS 307

Query: 204 PMLRPAQQYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLY 244
           PML+PA +YLT RS GAPAVLLSLAMQG+FRGFKDT TPLY
Sbjct: 308 PMLKPAVKYLTYRSFGAPAVLLSLAMQGIFRGFKDTTTPLY 348


>IMGA|AC235669_11.1 Multi antimicrobial extrusion protein MatE
           AC235669.1 59876-60988 H EGN_Mt090430 20090702
          Length = 206

 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/202 (49%), Positives = 117/202 (57%), Gaps = 37/202 (18%)

Query: 67  IGPVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDTIGSVN--------------- 111
           +GPVELAA GVSIALFNQ SRI IFPLVS+TTSFVAEEDTI  +N               
Sbjct: 3   LGPVELAAAGVSIALFNQASRITIFPLVSITTSFVAEEDTIERMNIKAAENDKSKLTEVT 62

Query: 112 PE---VQD--------SESLETGSVV-----------NSESKELIPQNVSGEGAYKSKSA 149
           PE   VQD        S   +  SVV           N ++  ++  N        S S 
Sbjct: 63  PESDVVQDIEKGTPKESNKAQKESVVGHNETNGTLGNNDKTNGVVMNNEQEPHLLSSDSR 122

Query: 150 MSSFDIAKMESGRRHIPSASSALVIGAILGFIQAIFLISGAKPLLNFMGVGSDSPMLRPA 209
            S      ++  +RHI SAS+AL+ G+ILG +QA  LI GAKPLL  MGV   SPML+PA
Sbjct: 123 SSKIKEIVVKKKKRHIASASTALLFGSILGLLQASVLIFGAKPLLYVMGVKHGSPMLKPA 182

Query: 210 QQYLTLRSLGAPAVLLSLAMQG 231
            +YLT RS GAPAVLLSLAMQG
Sbjct: 183 VKYLTYRSFGAPAVLLSLAMQG 204


>IMGA|Medtr7g076340.1 Multi antimicrobial extrusion protein MatE
           chr07_pseudomolecule_IMGAG_V3 15488888-15491081 E
           EGN_Mt090430 20090702
          Length = 297

 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/224 (38%), Positives = 124/224 (55%), Gaps = 37/224 (16%)

Query: 25  DFRH-VLKMDELGLEXXXXXXXXXXXXXXXXXXXLVDTAFIGQIGPVELAAVGVSIALFN 83
           +FR+   K DELG++                   L+DTAF+G IG VELAAVGVS ++FN
Sbjct: 104 NFRNGWFKFDELGMDMLSIALPAAVALAADPIASLIDTAFVGHIGAVELAAVGVSASVFN 163

Query: 84  QVSRIAIFPLVSVTTSFVAEEDTIGSVNPEVQDSESLETGSVVNSESKELIPQNVSGEGA 143
            VS++   PL+++TTSFVAEE  +  +  E +  ++ E G    SE K+L+         
Sbjct: 164 LVSKVFNVPLLNITTSFVAEEQAL--IGKEEESEQAEENG---KSERKKLLS-------- 210

Query: 144 YKSKSAMSSFDIAKMESGRRHIPSASSALVIGAILGFIQAIFLISGAKPLLNFMGVGSDS 203
                                  S S++LV+ A LG  + + L  G+ PL+  +G+ +DS
Sbjct: 211 -----------------------SVSTSLVLAAGLGIAETVALSLGSGPLMTILGIAADS 247

Query: 204 PMLRPAQQYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATG 247
           P+  PA+ +LTLR+ GA  ++++LA QG FRGFKDTKTPLYA G
Sbjct: 248 PIREPAEHFLTLRAFGALPIVIALAAQGTFRGFKDTKTPLYAVG 291


>IMGA|Medtr5g106650.1 Multi antimicrobial extrusion protein MatE
           chr05_pseudomolecule_IMGAG_V3 42910856-42916844 E
           EGN_Mt090430 20090702
          Length = 584

 Score =  123 bits (309), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 72/190 (37%), Positives = 110/190 (57%), Gaps = 43/190 (22%)

Query: 58  LVDTAFIGQIGPVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDTIGSVNPEVQDS 117
           L++TA+IG++G +ELA+ GVS+ +FN +S++   PL+SV TSFVA            QD 
Sbjct: 132 LMETAYIGRLGTLELASSGVSVVIFNIISKLFNIPLLSVATSFVA------------QDM 179

Query: 118 ESLETGSVVNSESKELIPQNVSGEGAYKSKSAMSSFDIAKMESGRRHIPSASSALVIGAI 177
            ++ +    N+      PQ                         R+ +PS S+AL++   
Sbjct: 180 ANISSSQNANN------PQ-------------------------RKQLPSVSTALLLALG 208

Query: 178 LGFIQAIFLISGAKPLLNFMGVGSDSPMLRPAQQYLTLRSLGAPAVLLSLAMQGVFRGFK 237
           +G  +A+ L  G++  L  +GV + +P L PAQ++L+LR+ GAPAV+LSLA+QG+FRGFK
Sbjct: 209 IGIFEALALYFGSRMFLRLIGVAAVNPTLVPAQKFLSLRAFGAPAVVLSLALQGIFRGFK 268

Query: 238 DTKTPLYATG 247
           DTKTP+   G
Sbjct: 269 DTKTPVICIG 278


>IMGA|Medtr5g106650.2 Multi antimicrobial extrusion protein MatE
           chr05_pseudomolecule_IMGAG_V3 42910856-42912047 E
           EGN_Mt090430 20090702
          Length = 308

 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/190 (37%), Positives = 110/190 (57%), Gaps = 43/190 (22%)

Query: 58  LVDTAFIGQIGPVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDTIGSVNPEVQDS 117
           L++TA+IG++G +ELA+ GVS+ +FN +S++   PL+SV TSFVA            QD 
Sbjct: 132 LMETAYIGRLGTLELASSGVSVVIFNIISKLFNIPLLSVATSFVA------------QDM 179

Query: 118 ESLETGSVVNSESKELIPQNVSGEGAYKSKSAMSSFDIAKMESGRRHIPSASSALVIGAI 177
            ++ +    N+      PQ                         R+ +PS S+AL++   
Sbjct: 180 ANISSSQNANN------PQ-------------------------RKQLPSVSTALLLALG 208

Query: 178 LGFIQAIFLISGAKPLLNFMGVGSDSPMLRPAQQYLTLRSLGAPAVLLSLAMQGVFRGFK 237
           +G  +A+ L  G++  L  +GV + +P L PAQ++L+LR+ GAPAV+LSLA+QG+FRGFK
Sbjct: 209 IGIFEALALYFGSRMFLRLIGVAAVNPTLVPAQKFLSLRAFGAPAVVLSLALQGIFRGFK 268

Query: 238 DTKTPLYATG 247
           DTKTP+   G
Sbjct: 269 DTKTPVICLG 278


>IMGA|AC235669_9.1 Multi antimicrobial extrusion protein MatE
           AC235669.1 42208-45531 E EGN_Mt090430 20090702
          Length = 444

 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/82 (73%), Positives = 67/82 (81%)

Query: 163 RHIPSASSALVIGAILGFIQAIFLISGAKPLLNFMGVGSDSPMLRPAQQYLTLRSLGAPA 222
           RHI SAS+AL+ G+ILG +QA  LI GAKPLL  MGV   SPML+PA +YLT RS GAPA
Sbjct: 91  RHIASASTALLFGSILGLLQASVLIFGAKPLLYVMGVKHGSPMLKPAVKYLTYRSFGAPA 150

Query: 223 VLLSLAMQGVFRGFKDTKTPLY 244
           VLLSLAMQG+FRGFKDT TPLY
Sbjct: 151 VLLSLAMQGIFRGFKDTTTPLY 172