Jatropha Genome Database

JcCB0171801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0171801.10 - phase: 0 
         (142 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g111930.1 hypothetical protein chr07_pseudomolecule_I...   110   2e-25

>IMGA|Medtr7g111930.1 hypothetical protein
           chr07_pseudomolecule_IMGAG_V3 26405829-26407037 E
           EGN_Mt090430 20090702
          Length = 139

 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/133 (51%), Positives = 83/133 (62%), Gaps = 18/133 (13%)

Query: 12  VQHVTKKSSDELLRKFAEVEDDNDEAXXXXXXXXXXXXXXXQARKEVACESPSHYSNSLV 71
           VQ VTKKSSDELLRKFAEV  +  +                   KE   ES S+ S ++V
Sbjct: 23  VQRVTKKSSDELLRKFAEVGTNEKKELRLIKRRKKM--------KENQSESSSNGSTAVV 74

Query: 72  EKRSLLPP-VTRKSVLLRQLGIGRSQLRARDFKNKSVFVA-IEKTWRKTLEGASRVLLEK 129
           E+RSLLP  V+RKSVL         QLR RD +NKS  +  I KTWR+T+EGASRV +EK
Sbjct: 75  ERRSLLPATVSRKSVL--------RQLRVRDNRNKSSLLGTIHKTWRRTVEGASRVFMEK 126

Query: 130 HYNRHRRLISDVA 142
           HYNRH+RLI+D+ 
Sbjct: 127 HYNRHKRLINDIV 139