Jatropha Genome Database

JcCB0171671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0171671.10 + phase: 1 /pseudo/partial
         (220 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g033680.1 integral membrane protein, DedA family, rel...    67   5e-12
IMGA|Medtr4g033450.1 UPF0043 membrane protein slr0305, related c...    67   7e-12

>IMGA|Medtr4g033680.1 integral membrane protein, DedA family,
           related chr04_pseudomolecule_IMGAG_V3 8387727-8381821 E
           EGN_Mt090430 20090702
          Length = 307

 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 67  PIEKALKDLLLWIKHDLGPWGPLVLAAVYIPLTILAVPASVLTLGGGYLFGLPVGFVADS 126
           PI   L     +I+   G  G  +  AVY  L ILA+PA  LT+  G LFG   G +  S
Sbjct: 127 PINTFLNQFSGFIE-GYGSAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSLTGTIIVS 185

Query: 127 IGATIGATAAFLVGRTIGRSYVMSKLKNYPKFEAVAIAVRKSGFKIXXXXXXXXXXXFNM 186
           I  T+ A+ AFL+ R   R  ++  ++   KF A+  A+ ++GFK+           F++
Sbjct: 186 ISGTVAASVAFLIARYFARERILKLVEGNKKFLAIDKAIGENGFKVVTLLRLSPLLPFSL 245

Query: 187 LNYLLSVTPVRTKDFMLAS 205
            NYL  +T V+   ++L S
Sbjct: 246 GNYLYGLTSVKFLPYVLGS 264


>IMGA|Medtr4g033450.1 UPF0043 membrane protein slr0305, related
           chr04_pseudomolecule_IMGAG_V3 8266216-8274185 E
           EGN_Mt090430 20090702
          Length = 331

 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 67  PIEKALKDLLLWIKHDLGPWGPLVLAAVYIPLTILAVPASVLTLGGGYLFGLPVGFVADS 126
           PI   L     +I+   G  G  +  AVY  L ILA+PA  LT+  G LFG   G +  S
Sbjct: 127 PINTFLNQFSGFIE-GYGSAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSLTGTIIVS 185

Query: 127 IGATIGATAAFLVGRTIGRSYVMSKLKNYPKFEAVAIAVRKSGFKIXXXXXXXXXXXFNM 186
           I  T+ A+ AFL+ R   R  ++  ++   KF A+  A+ ++GFK+           F++
Sbjct: 186 ISGTVAASVAFLIARYFARERILKLVEGNKKFLAIDKAIGENGFKVVTLLRLSPLLPFSL 245

Query: 187 LNYLLSVTPVRTKDFMLAS 205
            NYL  +T V+   ++L S
Sbjct: 246 GNYLYGLTSVKFLPYVLGS 264