Jatropha Genome Database

JcCB0171551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0171551.10 + phase: 0 /pseudo/partial
         (396 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g110030.1 Aspartate/other aminotransferase; ; chr04_p...   357   4e-99
IMGA|Medtr4g110010.1 Aspartate/other aminotransferase; chr04_pse...   327   4e-90
IMGA|AC225507_6.1 Aspartate/other aminotransferase AC225507.11 2...    84   1e-16
IMGA|Medtr4g012240.1 Aspartate/other aminotransferase; chr04_pse...    62   4e-10

>IMGA|Medtr4g110030.1 Aspartate/other aminotransferase; ;
           chr04_pseudomolecule_IMGAG_V3 24784975-24779539 E
           EGN_Mt090430 20090702
          Length = 424

 Score =  357 bits (917), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 174/340 (51%), Positives = 236/340 (69%), Gaps = 2/340 (0%)

Query: 17  NSVFSHVDRAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQQLVN 76
           +S F +++ AP+DPILGVT A+  D SP K+N+GVGAYR + GKP+VL  VR+AE+++  
Sbjct: 24  SSWFRNIEPAPKDPILGVTEAFLADQSPNKVNVGVGAYRDDNGKPVVLECVREAERRIAG 83

Query: 77  DRSRVKEYLPITGLADFNKLSAKLIFGADSNAIQENRVTTVQCLSGTGSLRVGAEFLARH 136
           ++    EYLP+ G     + S KL +G DS  I++ R+  VQ LSGTG+ R+ A F  R 
Sbjct: 84  NQ--FMEYLPMGGSIHMVQESLKLAYGDDSEFIKDKRIAAVQALSGTGACRLFAVFQQRF 141

Query: 137 YHQRIIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPTTRGLNFQGLLEDLGSAPSGAIVLL 196
           +    IYIP PTW NH  ++  AG+ +KTYRYY P ++GL+F GL++D+ +AP G+  LL
Sbjct: 142 HPNTQIYIPVPTWSNHHNIWRDAGVPIKTYRYYHPESKGLDFSGLMDDIKNAPDGSFFLL 201

Query: 197 HACAHNPTGVDPTLQQWDQIRQLMRSKGLMPFFDSAYQGFASGSLDSDAQSVRMFVADGG 256
           HACAHNPTGVDP+ +QW +I    ++KG  P FD AYQGFASG+ + D +++R+FV DG 
Sbjct: 202 HACAHNPTGVDPSEEQWREISSQFKAKGHFPLFDMAYQGFASGNPERDVKAIRIFVDDGH 261

Query: 257 ELLVAQSYAKNMGLYGERVGALSIVCRTADVASRVESQLKLVIRPMYSNPPIHGASIVAF 316
            L +AQSYAKNMGLYG+RVG LS++C     A  V+SQL+L+ RPMYSNPP+HGA +V+ 
Sbjct: 262 LLGLAQSYAKNMGLYGQRVGCLSLLCEDQKQAVAVKSQLQLISRPMYSNPPLHGALVVST 321

Query: 317 ILKDRNLYNEWTIELKAMADRIICMRQQLFDALHARGFPF 356
           +L D +L   W  E+K MADRII MR  L + L   G P 
Sbjct: 322 VLSDPDLKKLWLKEVKVMADRIIGMRTTLRENLENLGSPL 361


>IMGA|Medtr4g110010.1 Aspartate/other aminotransferase;
           chr04_pseudomolecule_IMGAG_V3 24776278-24772701 E
           EGN_Mt090430 20090702
          Length = 414

 Score =  327 bits (839), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 165/341 (48%), Positives = 227/341 (66%), Gaps = 9/341 (2%)

Query: 17  NSVFSHVDRAPEDPILGVTVAYNKDPSPVKLNLGVG-AYRTEEGKPLVLNVVRKAEQQLV 75
           +S F +++ AP+DPILGV  A+  D SP K+N+GV  AY  ++GKP+VL  VR+AE+++ 
Sbjct: 19  SSWFRNIEPAPKDPILGVAEAFLADQSPYKVNVGVKCAYHNDKGKPVVLECVREAERRIA 78

Query: 76  NDRSRVKEYLPITGLADFNKLSAKLIFGADSNAIQENRVTTVQCLSGTGSLRVGAEFLAR 135
            ++    EYLPI G     + S KL +G DS  I++ R+  VQ LSGTG+ R+ A F  R
Sbjct: 79  GNQ--FMEYLPIGGSIHMIEESLKLAYGDDSEFIKDKRIAAVQALSGTGACRLFAAFQQR 136

Query: 136 HYHQRIIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPTTRGLNFQGLLEDLGSAPSGAIVL 195
            + +  IY+P  TW         AG+ +KT+RYY P ++GL+F GL+ D+ +AP G+  L
Sbjct: 137 FHPKTQIYMPVLTWAKD------AGVPIKTFRYYHPESKGLDFPGLMVDIKNAPDGSFFL 190

Query: 196 LHACAHNPTGVDPTLQQWDQIRQLMRSKGLMPFFDSAYQGFASGSLDSDAQSVRMFVADG 255
           LHACAHNPTGVDP+ +QW +I    ++KG  P FD AYQGFASG  + DA+++R+F+ D 
Sbjct: 191 LHACAHNPTGVDPSEEQWREISSQFKAKGHFPLFDMAYQGFASGDPERDAKAIRIFLNDS 250

Query: 256 GELLVAQSYAKNMGLYGERVGALSIVCRTADVASRVESQLKLVIRPMYSNPPIHGASIVA 315
             + VAQSYAKNMGLYG+RVG LS++C     A  V+SQL+L+ RPMYSNPP+HGA +++
Sbjct: 251 HLIGVAQSYAKNMGLYGQRVGCLSLLCENEKQAVAVKSQLQLIARPMYSNPPLHGALVIS 310

Query: 316 FILKDRNLYNEWTIELKAMADRIICMRQQLFDALHARGFPF 356
            +L D  L   W  E+K MADRII MR  L + L   G P 
Sbjct: 311 TVLGDPELKKLWLKEVKVMADRIIGMRTALRENLENLGSPL 351


>IMGA|AC225507_6.1 Aspartate/other aminotransferase AC225507.11
          25622-24918 E EGN_Mt090430 20090702
          Length = 101

 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/52 (76%), Positives = 46/52 (88%), Gaps = 2/52 (3%)

Query: 6  ISASPTSGFQGNSVFSHVDRAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTE 57
          I+ SPT+    +SVF+H+ RAPEDPILGVTVAYNKDPSP+KLNLGVGAYRTE
Sbjct: 46 ITPSPTAS--SDSVFAHLVRAPEDPILGVTVAYNKDPSPIKLNLGVGAYRTE 95


>IMGA|Medtr4g012240.1 Aspartate/other aminotransferase;
           chr04_pseudomolecule_IMGAG_V3 2030950-2028080 E
           EGN_Mt090430 20090702
          Length = 81

 Score = 62.4 bits (150), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 39/53 (73%)

Query: 291 VESQLKLVIRPMYSNPPIHGASIVAFILKDRNLYNEWTIELKAMADRIICMRQ 343
           V+SQLK + RPMYSNPP+HGA IVA I+    L++EW  E++ MA RI  +++
Sbjct: 24  VKSQLKRLARPMYSNPPVHGARIVANIVGTPALFDEWKAEMEMMAGRIKTVKR 76