Jatropha Genome Database

JcCB0171531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0171531.10 - phase: 0 /partial
         (131 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g103670.1 Aminotransferase class-III; ; chr04_pseudom...   127   1e-30
IMGA|Medtr3g166570.1 Aminotransferase class-III chr03_pseudomole...    96   6e-21

>IMGA|Medtr4g103670.1 Aminotransferase class-III; ;
           chr04_pseudomolecule_IMGAG_V3 22386014-22374646 E
           EGN_Mt090430 20090702
          Length = 525

 Score =  127 bits (320), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 87/113 (76%), Gaps = 2/113 (1%)

Query: 3   INKILRSTLKNQLGSHSKHVAASGSSQKHLASAPCLAKLYGTEASLQKDDSTTDSRDGRG 62
           ++ ++RSTL+ +    S   A S S Q+ L  AP  ++   +++SL KD ST+D++ G+G
Sbjct: 1   MHTLVRSTLRTKAPLAS--AAVSRSFQETLLQAPLWSRTSSSQSSLAKDSSTSDAKTGQG 58

Query: 63  YKGHDMLAPFTAGWQSTDLHPLVIDKSEGSYVYDINGKKYLDSLAGLWCTALG 115
           +K HDMLAPFTAGWQ+ +L+PL+I+KSEGSYVYDINGKKYLD+LAGLW TALG
Sbjct: 59  FKSHDMLAPFTAGWQTNELNPLIIEKSEGSYVYDINGKKYLDALAGLWSTALG 111


>IMGA|Medtr3g166570.1 Aminotransferase class-III
           chr03_pseudomolecule_IMGAG_V3 43626365-43624593 E
           EGN_Mt090430 20090702
          Length = 125

 Score = 95.5 bits (236), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 42/57 (73%), Positives = 48/57 (84%)

Query: 59  DGRGYKGHDMLAPFTAGWQSTDLHPLVIDKSEGSYVYDINGKKYLDSLAGLWCTALG 115
           D   +K HDMLAPFTAGWQ+ +L+PL+I+KSEGSYVYDIN KKYLD LAGLW TAL 
Sbjct: 61  DYFRFKSHDMLAPFTAGWQTNELNPLIIEKSEGSYVYDINEKKYLDPLAGLWSTALA 117