Jatropha Genome Database

JcCB0171281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0171281.10 + phase: 0 /pseudo/partial
         (110 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g157380.1 Major facilitator superfamily MFS_1 chr03_p...   102   5e-23
IMGA|Medtr1g117260.1 Major facilitator superfamily MFS_1 chr01_p...    63   3e-11
IMGA|Medtr1g117250.1 Major facilitator superfamily MFS_1 chr01_p...    60   2e-10

>IMGA|Medtr3g157380.1 Major facilitator superfamily MFS_1
           chr03_pseudomolecule_IMGAG_V3 41481094-41483595 E
           EGN_Mt090430 20090702
          Length = 317

 Score =  102 bits (254), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 47/69 (68%), Positives = 60/69 (86%)

Query: 30  QGKAQGCISGIGSFANVVSPLLFSPLTALFLSERAPFHFPGFSIMCAGFTSMIALIQSIM 89
           QG+AQGCISGI S A++VSPL FSPLTALFLSE+APF+FPGFSIMC G  SM++ +QS+M
Sbjct: 249 QGRAQGCISGICSIAHIVSPLAFSPLTALFLSEKAPFNFPGFSIMCIGIASMVSFVQSMM 308

Query: 90  MRLPPPLIS 98
           +R+ P ++S
Sbjct: 309 LRVVPSILS 317


>IMGA|Medtr1g117260.1 Major facilitator superfamily MFS_1
           chr01_pseudomolecule_IMGAG_V3 25081440-25077799 E
           EGN_Mt090430 20090702
          Length = 441

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 44/61 (72%)

Query: 30  QGKAQGCISGIGSFANVVSPLLFSPLTALFLSERAPFHFPGFSIMCAGFTSMIALIQSIM 89
           QGKAQ  I+G  S ++++SP++ SPLT+LFLS  APF   GFSI+CA    MI+LI + M
Sbjct: 359 QGKAQTFIAGAQSISDLLSPIVMSPLTSLFLSSDAPFECKGFSILCASVCMMISLIFACM 418

Query: 90  M 90
           +
Sbjct: 419 L 419


>IMGA|Medtr1g117250.1 Major facilitator superfamily MFS_1
           chr01_pseudomolecule_IMGAG_V3 25074679-25071362 E
           EGN_Mt090430 20090702
          Length = 442

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 43/62 (69%)

Query: 30  QGKAQGCISGIGSFANVVSPLLFSPLTALFLSERAPFHFPGFSIMCAGFTSMIALIQSIM 89
           QGKAQ  I+G  S + ++SP++ SPLT+LFLS  APF   GFSI+CA    +I+LI + M
Sbjct: 359 QGKAQTFIAGANSISGLLSPIVMSPLTSLFLSSDAPFECKGFSIICASVCMIISLIFACM 418

Query: 90  MR 91
           + 
Sbjct: 419 LN 420