Jatropha Genome Database

JcCB0164571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0164571.10 - phase: 0 /partial
         (341 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g021130.1 Nucleolar GTP-binding 1; NOG, C-terminal ch...   126   1e-29
IMGA|Medtr2g024970.1 GTP1/OBG subdomain; chr02_pseudomolecule_IM...    63   2e-10
IMGA|Medtr1g087150.1 Small GTP-binding protein domain chr01_pseu...    55   4e-08

>IMGA|Medtr8g021130.1 Nucleolar GTP-binding 1; NOG, C-terminal
           chr08_pseudomolecule_IMGAG_V3 3811895-3813941 E
           EGN_Mt090430 20090702
          Length = 673

 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 121/232 (52%)

Query: 40  LREYLDNFPKRKYLHPYERSLIELTLGEGNYEEVLRNVDALRKKVVSVGKEHASVCAKSS 99
           L   +D FP+   +HP+   L+ +   + +Y+  L  ++  R  +  + K++  +     
Sbjct: 62  LSTIIDEFPRLGDIHPFYGDLLHVLYNKDHYKLALGQINTARNLIGKIAKDYVKLLKYGD 121

Query: 100 TKREAEERLNEGLEKLQEIFKREGKAVDELLNIAKTLRAMPVVDLETPTLCLVGAPNVGK 159
           +    +      L ++  + KR G ++  L  + + +  +P +D  T T+ + G PNVGK
Sbjct: 122 SLYRCKCLKVAALGRMCTVLKRIGPSLAYLEQVRQHMARLPSIDPNTRTILICGYPNVGK 181

Query: 160 SSLVRILSTGKPEVCNYPFTTRGILMGHISFDFKYFQVTDTPGLLKRCDEERNNLEKLTL 219
           SS +  ++    EV  Y FTT+ + +GH  + +  +QV DTPG+L R  E+RN +E  ++
Sbjct: 182 SSFINKITRADVEVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSI 241

Query: 220 AVLRHLPTAILYVHDLTGECGTPVSDQFEIYKEIKERFSNHLWLDVVSKCDL 271
             L HL  AIL+  D++G CG  ++ Q  +++ IK  F N   + V +K DL
Sbjct: 242 TALAHLRAAILFFLDISGSCGYTIAQQAALFQSIKSLFLNKPLIVVCNKTDL 293


>IMGA|Medtr2g024970.1 GTP1/OBG subdomain;
           chr02_pseudomolecule_IMGAG_V3 6507683-6502832 E
           EGN_Mt090430 20090702
          Length = 617

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 50/95 (52%), Gaps = 5/95 (5%)

Query: 149 LCLVGAPNVGKSSLVRILSTGKPEVCNYPFTTRGILMGHISFDF-KYFQVTDTPGLLKRC 207
           + +VGAPN GKS+L+ ++S  KPEV NYPFTT    +G +SFD+     V D PGLL   
Sbjct: 321 VGIVGAPNAGKSTLLSVVSAAKPEVANYPFTTLLPNLGVVSFDYDSTMVVADLPGLL--- 377

Query: 208 DEERNNLEKLTLAVLRHLPTAILYVHDLTGECGTP 242
            E  +    L    LRH       +H + G    P
Sbjct: 378 -EGAHRGFGLGHEFLRHTERCSALIHVVDGSSPQP 411


>IMGA|Medtr1g087150.1 Small GTP-binding protein domain
           chr01_pseudomolecule_IMGAG_V3 17466728-17469366 E
           EGN_Mt090430 20090702
          Length = 512

 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 6/90 (6%)

Query: 149 LCLVGAPNVGKSSLVRILSTGKPEVCNYPFTTRGILMGHISFDFKYFQVTDTPGLLKRCD 208
           +  VG PN GKS+L+  +S  KP V +Y FTT    +G++++D     V D PGL+K   
Sbjct: 327 VSFVGMPNAGKSTLLGAISRAKPAVGHYAFTTLRPNLGNLNYDDMSIIVADIPGLIKGAH 386

Query: 209 EERNNLEKLTLAVLRHLP-TAIL-YVHDLT 236
           + R     L  A LRH+  T +L YV D+ 
Sbjct: 387 QNRG----LGHAFLRHIERTKVLAYVVDVA 412